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Fig. 7 | BMC Systems Biology

Fig. 7

From: Identification of regulatory modules in genome scale transcription regulatory networks

Fig. 7

Heat map for co-expression levels of CoReg-identified modules in DAP-Seq network. We first ran CoReg on the DAP-seq network to identify the modules. Then for each co-regulatory module, we calculated the pairwise co-expression values for all the genes in the module and averaged the pairwise co-expression to get a single co-expression value for the module. We selected 108 modules which are significantly co-expressed (p-value <0.05) in at least 20 out of 62 experiments (See estimate p-value in large-scale network in Methods section) to plot the heat map for co-expression. The conditions for each experiment are marked in the top panel with black squares. The module type is marked on the left panel with black square

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