Residue | Model | Sn | Sp | Acc | MCC | AUC |
---|---|---|---|---|---|---|
K | Single SVM trained with AAC | 0.65 | 0.68 | 0.67 | 0.31 | 0.72 |
Single SVM trained with PWM | 0.67 | 0.68 | 0.68 | 0.33 | 0.73 | |
Single profile HMM trained from all data | 0.69 | 0.68 | 0.69 | 0.35 | 0.74 | |
Multiple profile HMMs trained from MDDLogo-clustered subgroups | 0.85 | 0.47 | 0.60 | 0.31 | 0.68 | |
Single SVM trained from multiple profile HMMs (MDD-Carb) | 0.80 | 0.76 | 0.77 | 0.53 | 0.84 | |
R | Single SVM trained with AAC | 0.62 | 0.62 | 0.62 | 0.23 | 0.66 |
Single SVM trained with PWM | 0.65 | 0.65 | 0.65 | 0.29 | 0.70 | |
Single profile HMM trained from all data | 0.68 | 0.66 | 0.67 | 0.33 | 0.72 | |
Multiple profile HMMs trained from MDDLogo-clustered subgroups | 0.90 | 0.55 | 0.67 | 0.44 | 0.81 | |
Single SVM trained from multiple profile HMMs (MDD-Carb) | 0.79 | 0.73 | 0.75 | 0.49 | 0.83 | |
T | Single SVM trained with AAC | 0.63 | 0.71 | 0.69 | 0.34 | 0.73 |
Single SVM trained with PWM | 0.67 | 0.71 | 0.70 | 0.36 | 0.74 | |
Single profile HMM trained from all data | 0.67 | 0.71 | 0.70 | 0.36 | 0.74 | |
Multiple profile HMMs trained from MDDLogo-clustered subgroups | 0.93 | 0.56 | 0.69 | 0.48 | 0.80 | |
Single SVM trained from multiple profile HMMs (MDD-Carb) | 0.79 | 0.76 | 0.77 | 0.53 | 0.84 | |
P | Single SVM trained with AAC | 0.63 | 0.61 | 0.62 | 0.23 | 0.66 |
Single SVM trained with PWM | 0.69 | 0.67 | 0.68 | 0.34 | 0.74 | |
Single profile HMM trained from all data | 0.69 | 0.67 | 0.68 | 0.34 | 0.74 | |
Multiple profile HMMs trained from MDDLogo-clustered subgroups | 0.88 | 0.49 | 0.62 | 0.35 | 0.76 | |
Single SVM trained from multiple profile HMMs (MDD-Carb) | 0.77 | 0.74 | 0.75 | 0.49 | 0.82 |