Table 1 List of GEO datasets in the meta-analysis
Dataset | Cell type | PMID | Platform | Samples | DEGs | ||||
|---|---|---|---|---|---|---|---|---|---|
PTB | LTB | Control | Outlier | PTB | LTB | ||||
GSE19435 | Whole blood | 20725040 | Illumina | 12 | 0 | 7 | 1 | 3881 | NA |
GSE19439 | Whole blood | 20725040 | Illumina | 17 | 13 | 6 | 2 | 461 | 0 |
GSE19444 | Whole blood | 20725040 | Illumina | 20 | 20 | 12 | 0 | 1916 | 0 |
GSE28623 | Whole blood | 22046420 | Agilent | 41 | 23 | 35 | 9 | 3974 | 0 |
GSE29536 | Whole blood | 24069364 | Illumina | 9 | 0 | 6 | 0 | 2719 | NA |
GSE34608 | Whole blood | 22547807 | Agilent | 8 | 0 | 18 | 2 | 9694 | NA |
GSE54992 | PBMC | 24647646 | Affymetrix | 9 | 6 | 6 | 3 | 3741 | 0 |
GSE62525 | PBMC | 26818387 | Phalanx | 12 | 14 | 13 | 3 | 8719 | 6934 |
GSE65517 | PBMC | 25992611 | Illumina | 3 | 0 | 3 | 0 | 414 | NA |
GSE34151 | Dendritic | 22233810 | Illumina | 129 | 0 | 126 | 4 | 5716 | NA |
GSE360 | Dendritic | 12663451 | Affymetrix | 2 | 0 | 2 | 0 | 479 | NA |
GSE53143 | Dendritic | 24482540 | Illumina | 8 | 0 | 10 | 0 | 3461 | NA |
GSE17477 | THP-1 | NA | Affymetrix | 4 | 0 | 4 | 0 | 251 | NA |
GSE29628 | THP-1 | 22675550 | Affymetrix | 5 | 0 | 1 | 0 | 174 | NA |
GSE51029 | THP-1 | NA | Agilent | 123 | 0 | 69 | 14 | 3858 | NA |
GSE57028 | THP-1 | 24899504 | Affymetrix | 3 | 0 | 3 | 0 | 2431 | NA |