TY - JOUR AU - Liu, Z. AU - Lavis, L. D. AU - Betzig, E. PY - 2015 DA - 2015// TI - Imaging live-cell dynamics and structure at the single-molecule level JO - Mol Cell Elsevier Inc VL - 58 UR - https://doi.org/10.1016/j.molcel.2015.02.033 DO - 10.1016/j.molcel.2015.02.033 ID - Liu2015 ER - TY - JOUR AU - Axelrod, D. PY - 2001 DA - 2001// TI - Total internal reflection fluorescence microscopy in cell biology JO - Traffic VL - 2 UR - https://doi.org/10.1034/j.1600-0854.2001.21104.x DO - 10.1034/j.1600-0854.2001.21104.x ID - Axelrod2001 ER - TY - JOUR AU - Sako, Y. AU - Minoghchi, S. AU - Yanagida, T. PY - 2000 DA - 2000// TI - Single-molecule imaging of EGFR signalling on the surface of living cells JO - Nat Cell Biol VL - 2 UR - https://doi.org/10.1038/35004044 DO - 10.1038/35004044 ID - Sako2000 ER - TY - JOUR AU - Ueda, M. AU - Sako, Y. AU - Tanaka, T. AU - Devreotes, P. AU - Yanagida, T. PY - 2001 DA - 2001// TI - Single-molecule analysis of chemotactic signaling in Dictyostelium cells JO - Science VL - 294 UR - https://doi.org/10.1126/science.1063951 DO - 10.1126/science.1063951 ID - Ueda2001 ER - TY - JOUR AU - Saxton, M. J. AU - Jacobson, K. PY - 1997 DA - 1997// TI - Single-particle tracking: applications to membrane dynamics JO - Annu Rev Biophys Biomol Struct VL - 26 UR - https://doi.org/10.1146/annurev.biophys.26.1.373 DO - 10.1146/annurev.biophys.26.1.373 ID - Saxton1997 ER - TY - JOUR AU - Gelles, J. AU - Schnapp, B. J. AU - Sheetz, M. P. PY - 1988 DA - 1988// TI - Tracking kinesin-driven movements with nanometre-scale precision JO - Nature VL - 331 UR - https://doi.org/10.1038/331450a0 DO - 10.1038/331450a0 ID - Gelles1988 ER - TY - JOUR AU - Reid, D. B. PY - 1979 DA - 1979// TI - An algorithm for tracking multiple targets. Autom. Control. IEEE JO - Trans VL - 24 ID - Reid1979 ER - TY - JOUR AU - Jaqaman, K. AU - Loerke, D. AU - Mettlen, M. AU - Kuwata, H. AU - Grinstein, S. AU - Schmid, S. L. PY - 2008 DA - 2008// TI - Robust single-particle tracking in live-cell time-lapse sequences JO - Nat Methods VL - 5 UR - https://doi.org/10.1038/nmeth.1237 DO - 10.1038/nmeth.1237 ID - Jaqaman2008 ER - TY - BOOK AU - Selvin, P. AU - Ha, T. PY - 2008 DA - 2008// TI - Single-molecule techniques: a laboratory manual PB - Ha T, editor. Cold Spring Harbor Laboratory Press CY - Selvin ID - Selvin2008 ER - TY - STD TI - Sako Y, Ueda M. Cell signaling reactions: single-molecular kinetic analysis. In: Sako Y, Ueda M, editors. Signal Transduct: Springer; 2011. http://www.springer.com/la/book/9789048198634. UR - http://www.springer.com/la/book/9789048198634 ID - ref10 ER - TY - STD TI - Vestergaard CL, Blainey PC, Flyvbjerg H. Optimal estimation of diffusion coefficients from single-particle trajectories. Phys Rev E - Stat Nonlinear, Soft Matter Phys. 2014;89:022726. ID - ref11 ER - TY - JOUR AU - Morimatsu, M. AU - Takagi, H. AU - Ota, K. G. AU - Iwamoto, R. AU - Yanagida, T. AU - Sako, Y. PY - 2007 DA - 2007// TI - Multiple-state reactions between the epidermal growth factor receptor and Grb2 as observed by using single-molecule analysis JO - Proc Natl Acad Sci U S A VL - 104 UR - https://doi.org/10.1073/pnas.0701330104 DO - 10.1073/pnas.0701330104 ID - Morimatsu2007 ER - TY - JOUR AU - Low-Nam, S. T. AU - Lidke, K. A. AU - Cutler, P. J. AU - Roovers, R. C. AU - PMP, B. e. H. AU - Wilson, B. S. PY - 2011 DA - 2011// TI - ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding JO - Nat Struct Mol Biol Nature Publishing Group VL - 18 UR - https://doi.org/10.1038/nsmb.2135 DO - 10.1038/nsmb.2135 ID - Low-Nam2011 ER - TY - JOUR AU - Hibino, K. AU - Watanabe, T. M. AU - Kozuka, J. AU - Iwane, A. H. AU - Okada, T. AU - Kataoka, T. PY - 2003 DA - 2003// TI - Single- and multiple-molecule dynamics of the signaling from H-Ras to cRaf-1 visualized on the plasma membrane of living cells JO - ChemPhysChem VL - 4 UR - https://doi.org/10.1002/cphc.200300731 DO - 10.1002/cphc.200300731 ID - Hibino2003 ER - TY - JOUR AU - Matsuoka, S. AU - Shibata, T. AU - Ueda, M. PY - 2013 DA - 2013// TI - Asymmetric PTEN distribution regulated by spatial heterogeneity in membrane-binding state transitions JO - PLoS Comput Biol VL - 9 UR - https://doi.org/10.1371/journal.pcbi.1002862 DO - 10.1371/journal.pcbi.1002862 ID - Matsuoka2013 ER - TY - JOUR AU - Semrau, S. AU - Schmidt, T. PY - 2007 DA - 2007// TI - Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data JO - Biophys. J. Elsevier VL - 92 UR - https://doi.org/10.1529/biophysj.106.092577 DO - 10.1529/biophysj.106.092577 ID - Semrau2007 ER - TY - JOUR AU - Hebert, B. AU - Costantino, S. AU - Wiseman, P. W. PY - 2005 DA - 2005// TI - Spatiotemporal image correlation spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells JO - Biophys. J. Elsevier VL - 88 UR - https://doi.org/10.1529/biophysj.104.054874 DO - 10.1529/biophysj.104.054874 ID - Hebert2005 ER - TY - JOUR AU - Kolin, D. L. AU - Costantino, S. AU - Wiseman, P. W. PY - 2006 DA - 2006// TI - Sampling effects, noise, and photobleaching in temporal image correlation spectroscopy JO - Biophys J Elsevier VL - 90 UR - https://doi.org/10.1529/biophysj.105.072322 DO - 10.1529/biophysj.105.072322 ID - Kolin2006 ER - TY - JOUR AU - Kolin, D. L. AU - Wiseman, P. W. PY - 2007 DA - 2007// TI - Advances in image correlation spectroscopy: measuring number densities, aggregation states, and dynamics of fluorescently labeled macromolecules in cells JO - Cell Biochem Biophys VL - 49 UR - https://doi.org/10.1007/s12013-007-9000-5 DO - 10.1007/s12013-007-9000-5 ID - Kolin2007 ER - TY - JOUR AU - Pandžić, E. AU - Rossy, J. AU - Gaus, K. PY - 2015 DA - 2015// TI - Tracking molecular dynamics without tracking: image correlation of photo-activation microscopy JO - Methods Appl Fluoresc VL - 3 UR - https://doi.org/10.1088/2050-6120/3/1/014006 DO - 10.1088/2050-6120/3/1/014006 ID - Pandžić2015 ER - TY - JOUR AU - Dempster, A. P. A. AU - Laird, N. M. N. AU - DDB, R. PY - 1977 DA - 1977// TI - Maximum likelihood from incomplete data via the EM algorithm JO - J R Stat Soc Ser B Methodol VL - 39 ID - Dempster1977 ER - TY - STD TI - Van Kampen NG. Stochastic processes in physics and chemistry. Third ed: North-holl. Pers. Libr. Elsevier. 2007. https://www.elsevier.com/books/stochastic-processes-in-physics-and-chemistry/van-kampen/978-0-444-52965-7. UR - https://www.elsevier.com/books/stochastic-processes-in-physics-and-chemistry/van-kampen/978-0-444-52965-7 ID - ref22 ER - TY - BOOK AU - Bilmes, J. A. PY - 1997 DA - 1997// TI - A gentle tutorial of the EM algorithm and its application to parameter estimation for Gaussian mixture and hidden Markov models ID - Bilmes1997 ER - TY - JOUR AU - Chenouard, N. AU - Smal, I. AU - de Chaumont, F. AU - Maška, M. AU - Sbalzarini, I. F. AU - Gong, Y. PY - 2014 DA - 2014// TI - Objective comparison of particle tracking methods JO - Nat Methods VL - 11 UR - https://doi.org/10.1038/nmeth.2808 DO - 10.1038/nmeth.2808 ID - Chenouard2014 ER - TY - JOUR AU - de Chaumont, F. AU - Dallongeville, S. AU - Chenouard, N. AU - Hervé, N. AU - Pop, S. AU - Provoost, T. PY - 2012 DA - 2012// TI - Icy: an open bioimage informatics platform for extended reproducible research JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2075 DO - 10.1038/nmeth.2075 ID - de Chaumont2012 ER - TY - JOUR AU - Di Rienzo, C. AU - Piazza, V. AU - Gratton, E. AU - Beltram, F. AU - Cardarelli, F. PY - 2014 DA - 2014// TI - Probing short-range protein Brownian motion in the cytoplasm of living cells JO - Nat Commun Nature Publishing Group VL - 5 UR - https://doi.org/10.1038/ncomms6891 DO - 10.1038/ncomms6891 ID - Di Rienzo2014 ER - TY - JOUR AU - Digman, M. A. AU - Gratton, E. PY - 2009 DA - 2009// TI - Imaging barriers to diffusion by pair correlation functions. Biophys. J. Biophysical JO - Society VL - 97 ID - Digman2009 ER - TY - JOUR AU - Sbalzarini, I. AU - Koumoutsakos, P. PY - 2005 DA - 2005// TI - Feature point tracking and trajectory analysis for video imaging in cell biology JO - J Struct Biol VL - 151 UR - https://doi.org/10.1016/j.jsb.2005.06.002 DO - 10.1016/j.jsb.2005.06.002 ID - Sbalzarini2005 ER - TY - JOUR AU - Suzuki, K. G. N. AU - Fujiwara, T. K. AU - Sanematsu, F. AU - Iino, R. AU - Edidin, M. AU - Kusumi, A. PY - 2007 DA - 2007// TI - GPI-anchored receptor clusters transiently recruit Lyn and G alpha for temporary cluster immobilization and Lyn activation: single-molecule tracking study 1 JO - J Cell Biol VL - 177 UR - https://doi.org/10.1083/jcb.200609174 DO - 10.1083/jcb.200609174 ID - Suzuki2007 ER - TY - STD TI - Akaike H. Information theory and an extension of themaximum likelihood principle. 2nd Int Symp Inf Theory, Akademinai Kiado. 1973:267–81. ID - ref30 ER -