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Table 3 List of temperature responsive genes that are induced under high ambient temperature

From: The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature

Database

Contig ID

G3

G5

FC

DEG

Protein description

Protein symbol

UniRef90

Contig12068

47.314

115.989

2.451

O

Low temperature and salt responsive protein family

RCI2B

UniRef90

TRINITY_DN194823_c4_g2_i1

1.183

2.434

2.057

O

low-temperature-responsive protein 78

LTI78

UniRef90

TRINITY_DN215430_c2_g10_i1

52.944

71.743

1.355

 

temperature-induced lipocalin

ATTIL, TIL

NR

Contig13986

13.059

21.587

1.653

 

temperature sensing protein-related

EDA35

UniRef90

TRINITY_DN212719_c3_g5_i1

22.746

27.332

1.202

 

staurosporin and temperature sensitive 3-like b

STT3B

NR

Contig13986

13.059

21.587

1.653

 

temperature sensing protein-related

EDA35

UniRef90

Contig18568

59.544

167.28

2.809

O

soybean gene regulated by cold-2

SRC2

UniRef90

TRINITY_DN204672_c3_g4_i1

81.603

185.102

2.268

O

cold shock domain protein 1

CSDP1

UniRef90

TRINITY_DN143765_c1_g1_i1

3344.374

6457.804

1.931

 

cold, circadian rhythm, and RNA binding 1

CCR1

UniRef90

TRINITY_DN143765_c1_g1_i1

3344.374

6457.804

1.931

 

cold, circadian rhythm, and rna binding 2

CCR2

NR

Contig7422

32.93

58.654

1.781

 

cold shock domain protein 3

CSP3

UniRef90

TRINITY_DN180886_c3_g1_i1

53.957

87.33

1.619

 

cold regulated 413 plasma membrane 1

COR413-PM1

UniRef90

Contig29838

115.723

141.657

1.224

 

COLD REGULATED 314 INNER MEMBRANE 1

COR414-TM1

UniRef90

Contig29838

115.723

141.657

1.224

 

cold regulated 413 plasma membrane 1

COR413-PM1

UniRef90

Contig6806

655.021

798.658

1.219

 

cold-regulated 47

COR47

NR

Contig30457

62.891

52.302

0.832

 

cold regulated gene 27

 

NR

Contig30457

62.891

52.302

0.832

 

cold regulated gene 27

 

UniRef90

Contig7573

71.504

241.895

3.383

O

Heat shock cognate 70 kDa protein 2

HSC-2

UniRef90

TRINITY_DN206978_c4_g7_i1

2.102

6.909

3.287

O

Heat shock protein SSB1

CTRG_03108

UniRef90

TRINITY_DN211503_c10_g1_i1

2.945

9.343

3.172

O

Heat shock protein 70 cognate

POPTR_0001s03410g

UniRef90

Contig10827

9.612

27.397

2.85

O

Heat shock protein 70

Hsp70

UniRef90

Contig12226

5.551

15.352

2.766

O

Heat shock protein 70

Hsp70

UniRef90

Contig27208

2.198

6.016

2.737

O

Heat shock protein 70 cognate

POPTR_0001s03410g

UniRef90

Contig491

21.018

56.678

2.697

O

Heat shock protein 70

Hsp70

UniRef90

Contig41549

13.056

32.822

2.514

O

Heat shock protein 90-2

HSP90-2

UniRef90

Contig7574

123.881

295.909

2.389

O

Heat shock protein 70 (Fragment)

Hsp70

UniRef90

Contig13144

2.657

6.189

2.329

O

Heat shock protein 90

NtHsp90er-2

UniRef90

TRINITY_DN211503_c13_g8_i1

6.785

15.285

2.253

O

Heat shock cognate protein

SCHSP70

UniRef90

TRINITY_DN211503_c13_g6_i1

5.548

12.377

2.231

O

Heat shock cognate 70 kDa protein 2

HSC-2

UniRef90

Contig7001

5.285

11.628

2.2

O

Heat shock protein 60

 

UniRef90

TRINITY_DN216671_c13_g21_i1

8.133

17.801

2.189

O

Heat shock protein 70-like protein

Hsp70

UniRef90

TRINITY_DN177960_c1_g1_i1

9.841

21.242

2.159

O

Heat Stress Transcription Factor family protein

POPTR_0016s05680g

UniRef90

Contig13383

63.889

137.162

2.147

O

Heat shock factor

NtHSF1

UniRef90

Contig42189

2.738

5.664

2.069

O

Heat shock protein 70

POPTR_0008s15140g

UniRef90

Contig19499

47.77

96.941

2.029

O

Heat shock protein DnaJ

POPTR_0017s08520g

UniRef90

TRINITY_DN207002_c3_g1_i1

28.896

58.041

2.009

O

Heat shock protein 70 cognate

POPTR_0001s03410g

UniRef90

Contig5684

9.573

19.091

1.994

 

Heat shock protein 70-like protein

Hsp70

UniRef90

TRINITY_DN203097_c2_g2_i1

10.877

19.739

1.815

 

Heat shock protein, putative

RCOM_1582180

UniRef90

TRINITY_DN22543_c1_g1_i1

2.424

4.359

1.798

 

Heat shock protein 90

NtHsp90er-2

UniRef90

TRINITY_DN208763_c5_g5_i1

1.235

2.108

1.707

 

Heat shock protein 70

RCOM_0911270

UniRef90

TRINITY_DN163361_c0_g2_i1

1.609

2.741

1.704

 

Heat shock 70 kDa protein, mitochondrial

HSP68

UniRef90

TRINITY_DN213169_c3_g3_i1

3.711

6.094

1.642

 

Heat shock cognate 70 kDa protein

LOC_Os11g47760

UniRef90

TRINITY_DN190866_c6_g4_i1

4.813

7.637

1.587

 

Heat shock protein binding protein, putative

RCOM_1732070

UniRef90

TRINITY_DN163361_c0_g1_i1

1.814

2.832

1.561

 

Heat shock 70 kDa protein, mitochondrial

Hsp68

UniRef90

TRINITY_DN195294_c1_g1_i1

1.402

2.148

1.532

 

Heat shock 70kD protein (Fragment)

Hsp70

UniRef90

TRINITY_DN200501_c3_g4_i1

1.395

2.016

1.445

 

Heat shock protein 90 (Fragment)

M569_09035

UniRef90

Contig30036

2.547

3.653

1.434

 

Heat shock protein 90 (Fragment)

Hsp90

UniRef90

Contig4365

18.055

24.216

1.341

 

Heat shock cognate protein

SCHSP70

UniRef90

TRINITY_DN216543_c12_g10_i1

11.667

15.016

1.287

 

Heat shock protein 60 (Fragment)

hsp60

UniRef90

Contig20702

16.978

21.647

1.275

 

Heat shock cognate 70 kDa protein

LOC_Os11g47760

UniRef90

Contig34911

9.443

12.021

1.273

 

Heat shock protein 70

Hsp70

UniRef90

Contig28357

3.003

3.812

1.269

 

Heat shock 70 kDa protein 10

HSP70-10

UniRef90

TRINITY_DN213351_c2_g3_i1

3.194

3.823

1.197

 

Heat shock factor protein 5

POPTR_0010s11490g

UniRef90

Contig42828

2.283

2.632

1.153

 

Heat shock protein binding protein, putative

RCOM_0564980

UniRef90

TRINITY_DN195327_c8_g5_i1

2.726

2.974

1.091

 

Heat shock 70 kDa protein 7

HSP70-7

UniRef90

TRINITY_DN208988_c4_g4_i1

12.901

13.632

1.057

 

Heat shock protein 70

POPTR_0001s29210g

UniRef90

Contig8566

10.542

10.921

1.036

 

Heat shock protein

ophh-56

UniRef90

TRINITY_DN174225_c0_g1_i1

1.589

29.996

18.877

O

Putative uncharacterized protein

FPF1

UniRef90

Contig1416

8.015

21.611

2.696

O

Uncharacterized protein

 

UniRef90

TRINITY_DN194926_c35_g60_i1

45.891

111.128

2.422

O

Putative uncharacterized protein

LHY

UniRef90

Contig1941

12.978

28.424

2.19

O

Beta-amylase (EC 3.2.1.2)

 

UniRef90

TRINITY_DN211505_c5_g1_i1

7.987

15.501

1.941

 

WRKY5

FT

UniRef90

TRINITY_DN212536_c5_g1_i1

9.007

12.199

1.354

 

Gigantea-like

GI

UniRef90

TRINITY_DN210901_c7_g2_i1

32.791

42.343

1.291

 

Putative uncharacterized protein

TOC1

UniRef90

TRINITY_DN212865_c9_g6_i1

1.239

2.948

2.379

O

Phototropin-2

PHOT2

UniRef90

TRINITY_DN216565_c8_g14_i1

1.612

2.838

1.761

 

Phototropin-1

M569_09651

UniRef90

Contig7059

1.487

2.447

1.646

 

Phototropin-2

PHOT2

UniRef90

TRINITY_DN143824_c1_g1_i1

370.609

458.745

1.238

 

Chloroplast photosynthetic water oxidation complex 33kDa subunit

 

UniRef90

TRINITY_DN207410_c1_g1_i1

1238.763

1242.461

1.003

 

Photosystem I reaction center subunit IV A

MTR_7g099390

  1. FC is the fold-change of contigs (G5/G3)