Table 2 The performance of Walktrap versus Walktrap plus DSD at different edge removal thresholds; We discard clusters of size < 3
From: RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters
Method | Enriched Clusters | # NEC | % NEC | # NEC S | % NEC S |
|---|---|---|---|---|---|
PPI | 8/19 (42.11%) | 280.0 | 4.59% | 226.0 | 3.71% |
3.5 | 63/105 (60.00%) | 504.0 | 8.27% | 464.0 | 7.61% |
4.0 | 128/189 (67.72%) | 1108.0 | 18.18% | 919.0 | 15.08% |
4.5 | 207/311 (66.56%) | 1951.0 | 32.00% | 1430.0 | 23.46% |
5.0 | 153/303 (50.50%) | 2476.0 | 40.62% | 1531.0 | 25.11% |
5.5 | 70/164 (42.68%) | 2418.0 | 39.67% | 1269.0 | 20.82% |
6.0 | 43/88 (48.86%) | 1398.0 | 22.93% | 837.0 | 13.73% |