Table 4 The performance of Modified Walktrap versus Modified Walktrap plus DSD at different edge removal thresholds; We discard clusters of size < 3, and restrict maximum cluster size to be < 100
From: RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters
| Method | Enriched Clusters | # NEC | % NEC | # NEC S | % NEC S |
|---|---|---|---|---|---|
| PPI | 35/64 (54.69%) | 3274.0 | 53.69% | 1703.0 | 27.93% |
| 3.5 | 56/91 (61.54%) | 570.0 | 9.35% | 468.0 | 7.68% |
| 4.0 | 97/142 (68.31%) | 1155.0 | 18.95% | 915.0 | 15.01% |
| 4.5 | 144/215 (66.98%) | 1869.0 | 30.66% | 1415.0 | 23.21% |
| 5.0 | 96/174 (55.17%) | 2785.0 | 45.69% | 1724.0 | 28.28% |
| 5.5 | 56/93 (60.22%) | 4067.0 | 66.72% | 1783.0 | 29.25% |
| 6.0 | 51/81 (62.96%) | 4155.0 | 68.16% | 1667.0 | 27.35% |
| PPI | 39/69 (56.52%) | 3367.0 | 55.21% | 1782.0 | 29.22% |
| 3.5 | 55/91 (60.44%) | 495.0 | 8.12% | 463.0 | 7.60% |
| 4.0 | 97/142 (68.31%) | 1155.0 | 18.95% | 915.0 | 15.01% |
| 4.5 | 144/215 (66.98%) | 1869.0 | 30.66% | 1415.0 | 23.21% |
| 5.0 | 95/174 (54.60%) | 2686.0 | 44.06% | 1676.0 | 27.49% |
| 5.5 | 60/106 (56.60%) | 3978.0 | 65.26% | 1862.0 | 30.54% |
| 6.0 | 66/96 (68.75%) | 4077.0 | 66.88% | 1680.0 | 27.56% |