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Table 5 Exploring the dendrogram cut level for modified Walktrap with a maximum cluster size of 100

From: RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters

Dendrogram cut level

200

300

500

700

PPI

55.3%

53.6%

54.9%

55.3%

DSD 4.5

30.7%

30.7%

30.7%

30.3%

DSD 5

44.1%

44.0%

44.1%

44.2%

DSD 5.5

66.7%

66.9%

65.1%

65.3%

DSD 6

72.6%

68.3%

66.2%

63.0%

DSD 6.5

65.5%

68.4%

61.8%

53.7%

  1. The reported number is the percentage of nodes placed into an enriched cluster (i.e. the statistic we are calling % NEC). At different dendrogram cut levels, the best percentage is bolded; in every case it is modified Walktrap plus DSD, at varying thresholds (5.5, 6, and 6.5)