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Table 4 WD40 proteins in different layers by k-core decomposition on HC-PPI network

From: PPI network analyses of human WD40 protein family systematically reveal their tendency to assemble complexes and facilitate the complex predictions

k-layer

# of WD40

# of non-WD40

WD40 protein

21

0

26

–

20

0

203

–

19

3

141

MED16, GBLP, COR1C

18

8

130

FBW1A, FBXW7, ARC1B, FBW1B, RBBP4, DDB1, PAAF1, RBBP7

17

11

253

EED, VPRBP, STRN3, WDR5, MEP50, CDC20, STRN, DDB2, WDR1, BUB3, 2ABB

16

12

262

WDR48, WRP73, RFWD2, EIF3B, SEH1, RBBP5, STRN4, PRP19, EIF3I, DCAF7, RAE1L, PRP4

15

10

216

TBL1X, SEC13, GEMI5, NEDD1, SNR40, COPA, FZR, STRAP, COR1B, 2ABD

14

6

216

TBL1R, TLE1, KI21A, TAF5, WDR62, FAN

13

8

277

2ABA, KI21B, TF3C2, 2ABG, LRWD1, LYST, WDR33, WAP53

12

6

281

RPTOR, CAF1B, GBB2, GBB1, WDR82, COR2A

11

7

376

EDC4, WDR61, FBXW5, COPB2, A16L1, WDR20, WDR36

10

13

312

CIR1A, CORO7, APAF, DCA11, PAN2, PLRG1, FBXW4, DTL, TBL3, WDR18, WDR26, PHIP, THOC6

9

12

448

WIPI2, LIS1, NUP37, HPS5, PALB2, WDR90, ERCC8, WDR92, DCAF8, WDR6, NUP43, TAF5L

8

12

426

PI3R4, GBB4, TLE3, WDR83, ELP2, CIAO1, THOC3, WDR35, WDR74, FBXW8, ARC1A, CSTF1

7

7

463

LST8, DC1I2, DCAF4, WDR75, NBEL1, WDR76, HIRA

6

3

551

SMU1, WDR3, DC1I1

5

15

682

SHKB1, DCA10, KCTD3, BRWD1, GBB5, GBB3, AAAS, PWP2, WDHD1, EMAL3, UTP18, PEX7, BOP1, SC31A, WDR24

4

14

802

NBEL2, WDR34, EIF2A, WDR44, STXB5, PRP17, WDTC1, PLAP, TLE2, WDR43, WSB1, FBXW2, UTP15, AHI1

3

17

1078

NLE1, WDR12, TSSC1, WIPI1, DCA13, POC1B, COR1A, IF172, SCAP, AAMP, EMAL4, WDR70, BRWD3, DCAF5, TRAF7, WDR5B, WDR46

2

20

1449

DCA12, FBXW9, WIPI4, EMAL1, LRBA, DMXL2, TEP1, WSB2, EMAL2, WDR59, WDR55, DMXL1, WDR7, PK1IP, PWP1, HERC1, WDR4, TBL2, MIO, U3IP2

1

19

2313

TCPR2, COR2B, WDR47, WDR37, GNB1L, DC121, IFT80, IF122, TBL1Y, SC31B, DC4 L1, MABP1, NOL10, EMAL5, KTNB1, DEND3, WDR81, NBEA, WDR25