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Table 1 Overview of the sequencing and mapping of transcriptome data of different rice tissues

From: Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development

Stage

Tissue

RawData(bp)

RawData (number)

CleanData (number)

Mapped reads(number)

Mapping rate

Booting stage

leaves

4,392,290,250

35,138,322

26,531,310

24,899,774

93.9%

sheath

5,873,023,000

46,984,184

36,659,446

34,301,867

93.6%

stamen

6,059,084,500

48,472,676

38,746,796

36,425,576

94.0%

pistil

4,348,780,750

34,790,246

26,154,367

24,861,601

95.1%

lemma & palea

4,673,388,000

37,387,104

30,018,313

28,174,883

93.9%

Mature grain stage

embryo

4,524,559,250

36,196,474

30,212,929

27,930,200

92.4%

endosperm

4,892,736,750

39,141,894

27,017,181

25,101,827

92.9%

lemma & palea

5,028,140,000

40,225,120

29,610,747

27,684,908

93.5%