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Table 1 Overview about publicly available omic data resources

From: New perspectives: systems medicine in cardiovascular disease

Name Description URL Reference
1000 Genomesproject The goal of the 1000 genomes project was to find most genetic variants with frequencies of at least 1% in the populations studied  
ArrayExpress Archive of functional genomics data stores data from high-throughput functional genomics experiments  
GEO Gene Expression Omnibus Public functional genomics data repository supporting MIAME-compliant data submissions. Tools are provided to help users query and download experiments and curated gene expression profiles  
EBI Expression Atlas Gene expression patterns under different conditions. Data sets are re-analyzed in-house to detect baseline and differential expression patterns [103]
GXD The Mouse Gene Expression Database Collection of gene expression data in rodents. Focus on development. [104]
TCGA – The Cancer Genome Atlas Aims to assess the value of large-scale multidimensional analysis of molecular characteristics in human cancer and to provide the data rapidly to the research community. [53]
LINCS - The Library of Integrated Network-Based Cellular Signatures Aims to create a network-based holistic understanding of biology by cataloging changes in gene expression and other cellular processes upon perturbation. [57]
CCLE - The Cancer Cell Line Encyclopedia A compilation of gene expression, chromosomal copy number and sequencing data from 947 human cancer cell lines with pharmacological profiles for 24 anticancer drugs across 479 of the cell lines. [56]
PRIDE – PRoteomics IDEntifications Repository for proteomics data, protein and peptide identifications and post-translational modifications. [105]
COPaKB Proteome biology platform specifically for cardiovascular research [106]