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Fig. 5 | BMC Systems Biology

Fig. 5

From: Identification of reaction organization patterns that naturally cluster enzymatic transformations

Fig. 5

Analysis of TS pairs using RPAIR classes. The figure represents the abundance of each TS pair as a function of the class proposed by Kotera [4]. We categorized the pairs as being in reactions in which the whole predicted pair entirely fit the published RPair (we called this EPP). The second group includes reactions representing at least one hit with one or more fails, which we called mixed pairs, and this group was subdivided into positive (MPP) and failed pairs (MFP). The last group contains reactions in which we failed to detect an RPair, called failed pairs (FP). We also arranged the TS pairs according to their mean precision levels (x) estimated from the CTSs by Bayesian analysis. TS pairs in the precision range x ≥ 0.8 were classified as “high confidence”, those in the range 0.80 > x ≥ 0.60 were classified as “medium confidence”, and those in the range x < 0.60 were labeled “low confidence”

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