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Table 1 Overview of databases currently used in the pipeline

From: DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Database

Purpose

Reference

BRENDA

Michaelis constants, catalytic rates

[29]

SABIO-RK

Kinetic rates

[30]

eQuilibrator

Equilibrium constants

[31]

Rhea

Identifier translation

[42]

MetaCyc

Identifier translation

[43]

MetaNetX

Identifier translation

[44]

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BMC Systems Biology

ISSN: 1752-0509

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