Table 2 Coverage of kinetic rates obtained from the databases with (+) and without (-) the use of identifier translators
Model | Database | k M | Â | k cat | Â | k eq | Â |
|---|---|---|---|---|---|---|---|
| Â | Â | + | - | + | - | + | - |
E. coli | # rates | 10183 | Â | 2583 | Â | 2583 | Â |
iJO1366 | BRENDA | 637 | 591 | 286 | 259 | / | / |
| Â | eQuilibrator | / | / | / | / | 491 | 0 |
| Â | SABIO-RK | 228 | 0 | 4 | 0 | 0 | 0 |
| Â | # found | 700 | 591 | 290 | 259 | 491 | 0 |
E. coli | # rates | 380 | Â | 95 | Â | 95 | Â |
Core model | BRENDA | 29 | 0 | 10 | 0 | / | / |
| Â | eQuilibrator | / | / | / | / | 37 | 0 |
| Â | SABIO-RK | 10 | 0 | 2 | 0 | 0 | 0 |
| Â | # found | 33 | 0 | 12 | 0 | 37 | 0 |
S. cerevisiae | # rates | 5509 | Â | 1612 | Â | 1612 | Â |
iTO977 | BRENDA | 342 | 330 | 113 | 108 | / | / |
| Â | eQuilibrator | / | / | / | / | 450 | 0 |
| Â | SABIO-RK | 104 | 96 | 3 | 0 | 0 | 0 |
| Â | # found | 370 | 356 | 116 | 108 | 450 | 0 |
L. lactis | # rates | 73 | Â | 21 | Â | 21 | Â |
| Â | BRENDA | 2 | 2 | 1 | 1 | / | / |
| Â | eQuilibrator | / | / | / | / | 12 | 0 |
| Â | SABIO-RK | 2 | 2 | 0 | 0 | 0 | 0 |
| Â | # found | 3 | 3 | 1 | 1 | 12 | 0 |