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Table 2 Coverage of kinetic rates obtained from the databases with (+) and without (-) the use of identifier translators

From: DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Model Database k M   k cat   k eq  
   + - + - + -
E. coli # rates 10183   2583   2583  
iJO1366 BRENDA 637 591 286 259 / /
  eQuilibrator / / / / 491 0
  SABIO-RK 228 0 4 0 0 0
  # found 700 591 290 259 491 0
E. coli # rates 380   95   95  
Core model BRENDA 29 0 10 0 / /
  eQuilibrator / / / / 37 0
  SABIO-RK 10 0 2 0 0 0
  # found 33 0 12 0 37 0
S. cerevisiae # rates 5509   1612   1612  
iTO977 BRENDA 342 330 113 108 / /
  eQuilibrator / / / / 450 0
  SABIO-RK 104 96 3 0 0 0
  # found 370 356 116 108 450 0
L. lactis # rates 73   21   21  
  BRENDA 2 2 1 1 / /
  eQuilibrator / / / / 12 0
  SABIO-RK 2 2 0 0 0 0
  # found 3 3 1 1 12 0
  1. Rhea, MetaCyc and MetaNetX databases were used for identifier translation
  2. If multiple values were found for the same reaction rate then this was only counted once
  3. If the rate is not available from this database, it is noted with /