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Table 3 Comparison of run times and memory usage of pipeline for models of different sizes

From: DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Model

Reactions

Peak

Parameter

Parameter

Model

Total

 

(metabolites)

memory

search

balancing

building

 
  

(GB)

(min:sec)

(min:sec)

(min:sec)

(min:sec)

E. coli

2583

29.6

22:05

33:14

2:12

57:33

iJO1366

(1805)

     

E. coli

95

0.2

0:58

0:04

0:07

1:10

Core model

(92)

     

S. cerevisiae

1612

19.1

13:18

11:44

1:14

26:18

iTO977

(2245)

     

L. lactis

21

0.2

0:34

0:01

0:01

0:41

 

(26)

     
  1. All values were calculated using 12 x 2.1 GHz cores of an AMD Opteron Processor 6272
  2. Peak memory = maximum amount of RAM used
  3. Databases were searched locally offline so that online connection speeds did not influence results
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BMC Systems Biology

ISSN: 1752-0509

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