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Table 3 Comparison of run times and memory usage of pipeline for models of different sizes

From: DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Model Reactions Peak Parameter Parameter Model Total
  (metabolites) memory search balancing building  
   (GB) (min:sec) (min:sec) (min:sec) (min:sec)
E. coli 2583 29.6 22:05 33:14 2:12 57:33
iJO1366 (1805)      
E. coli 95 0.2 0:58 0:04 0:07 1:10
Core model (92)      
S. cerevisiae 1612 19.1 13:18 11:44 1:14 26:18
iTO977 (2245)      
L. lactis 21 0.2 0:34 0:01 0:01 0:41
  (26)      
  1. All values were calculated using 12 x 2.1 GHz cores of an AMD Opteron Processor 6272
  2. Peak memory = maximum amount of RAM used
  3. Databases were searched locally offline so that online connection speeds did not influence results