Table 2 Values of the parameters to conduct bifurcation analysis. Columns are the networks, and rows are the parameters. Initial conditions do not matter for these calculations, for simulations of oscillations we set OP = PO = 0 and OO = 2.1 PP = 1.9 to start from an asymmetric state
From: Single molecules can operate as primitive biological sensors, switches and oscillators
AM | TI | BP | BD1 | CO | SO | |
|---|---|---|---|---|---|---|
tot | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 |
nt | [0.0,10.0] | [0.0,10.0] | [0.0,10.0] | [0.0,15] | [0.0,15] | [0.0,15] |
nd | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 |
p0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
p1 | – | 1.0 | 1.0 | 1.0 | – | – |
p2 | – | 1.0 | – | – | – | – |
p3 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | – |
d0 | 1.0 | 1.0 | – | – | – | – |
d1 | – | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
d2 | – | 1.0 | 1.0 | 1.0 | – | – |
d3 | 1.0 | 1.0 | 1.0 | 1.0 | – | – |
bp0 | 0.05 | 0.05 | 0.05 | 0.05 | – | – |
bp1 | – | 0.05 | 0.05 | 0.05 | – | – |
bp2 | – | 0.05 | – | – | – | – |
bp3 | 0.05 | 0.05 | 0.05 | 0.05 | – | 0.05 |
bd0 | 0.05 | 0.05 | – | – | – | – |
bd1 | – | 0.05 | 0.05 | – | – | – |
bd2 | – | 0.05 | 0.05 | 0.05 | 0.05 | 0.05 |
bd3 | 0.05 | 0.05 | 0.05 | 0.05 | – | – |