Table 2 Experimental platforms used in the tests
From: SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences
Platform | |||
|---|---|---|---|
FPGA | GPU | Xeon Phi | |
Host | 2 ×Intel Xeon E5-2670 2.60Ghz | 2 ×Intel Xeon E5-2695 v3 2.30Ghz | 2 ×Intel Xeon E5-2695 v3 2.30Ghz |
(16 cores, 32GB RAM) | (28 cores, 64 GB RAM) | (28 cores, 128 GB RAM) | |
Accelerator | Intel Arria 10 GX | NVIDIA GTX 980 | Intel Xeon Phi 3120P |
(Maxwell architecture, 2048 CUDA cores, 4GB RAM) | |||
(2GB RAM) | NVIDIA GTX1080 | (Knights corner generation, 57 cores, 6GB RAM) | |
(Pascal architecture, 2560 CUDA cores, 8GB RAM) | |||
Operating system | CentOS release 6.5 | Debian release 8.0 | CentOS release 6.5 |
Compiler | Intel ICC 17.0.1.132 | Intel ICC 17.0.1.132 | Intel ICC 17.0.1.132 |
Intel FPGA OpenCL SDK 16.0 | CUDA SDK 7.5 | ||