Table 3 Information of the sequences used in the tests
From: SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences
Set | Sequence 1 | Sequence 2 | Matrix size | Score | ||
|---|---|---|---|---|---|---|
Accesion | Size | Accesion | Size | (cells) | ||
Small | AF133821.1 | 10K | AY352275.1 | 10K | 100K | 5027 |
NC_001715.1 | 57K | AF494279.1 | 57K | 3M | 51 | |
NC_000898 | 162K | NC_007605 | 172K | 28M | 18 | |
NC_003064.2 | 543K | NC_000914.1 | 536K | 291M | 48 | |
Medium | CP000051.1 | 1M | AE002160.2 | 1M | 1G | 82091 |
BA000035.2 | 3M | BX927147.1 | 3M | 9G | 3888 | |
AE016879.1 | 5M | AE017225.1 | 5M | 25G | 5220775 | |
NC_005027.1 | 7M | NC_003997.3 | 5M | 35G | 157 | |
NC_017186.1 | 10M | NC_014318.1 | 10M | 100G | 10235056 | |
NT_033779.4 | 23M | NT_037436.3 | 25M | 575G | 9059 | |
Large | NC_000021.9 | 48M | NC_006488.4 | 34M | 1.6T | 24922392 |
NC_000022.11 | 51M | NC_006489.4 | 38M | 1.9T | 20133752 | |
NC_000019.10 | 59M | NC_006486.4 | 62M | 3.7T | 23570332 | |
NC_000020.11 | 65M | NC_006487.4 | 67M | 4.4T | 35488641 | |