Table 7 Categorized options of SW implementations on different accelerator devices
From: SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences
Implementation | SSW | SWIFOLD | SWAPHI-LS | SW# | CUDAlign |
|---|---|---|---|---|---|
Device | Intel multicore | Intel FPGA | Intel Xeon Phi | NVIDIA GPU | |
Matrix size (cells) | Performance (GCUPS) | ||||
Small | - | +++ | + | ++ | + |
Medium | - | +++ | + | +++ | +++ |
Large | - | ++ | + | ++ | +++ |