Table 3 Content type and functional features of BioGraph and other considered integrated systems
From: BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources
Product | Biological data | Web interface | Dynamic visualization | Custom queries | Analytics | Expandability |
|---|---|---|---|---|---|---|
ncRNA-DB | ncRNAs, RNAs, genes, diseases | Yes | Yes | Yes | No | No |
JBioWH | Genes, proteins, proteins clusters, proteins domains, chromosomes, enzymes, ppi, pathways, reactions, drugs, taxonomies, functional annotations | Desktop client | No | Yes | No | Yes |
mirWalk | Genes, miRNAs, functional annotations, miRNA-target interactions | Yes | No | No | Yes | No |
ARN | Genes, miRNAs, regulations of adipogenesis | Yes | Yes | No | Yes | No |
SSER | Essential reactions | Yes | No | No | No | No |
Bio4j | Proteins, taxonomy, functional annotations, enzymes | Command line | No | Yes | No | Yes |
HumanMine | Genes, proteins, protein domains, protein localizations, pathways, genes expressions, functional annotations, diseases, phenotypes, molecular interactions, genetic interactions | Yes | No | Yes | Yes | Yes |
BioGraph | Genes, proteins, miRNAs, pathways, functional annotations, miRNA-target interactions, miRNA-cancer relations, miRNA-SNP relations | Yes | Yes | Yes | Yes | Yes |