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Table 5 Comparison of ModuleDiscoverer- and KeyPathwayMiner-detected regulatory modules

From: Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin

Underlying experimental dataset Component number of MD modules Overlap (percentage value regarding KPM module) Component number of KPM modules
Transcriptome 0.5 h 511 134 (75.7%) 177
Transcriptome 1 h 256 62 (63.9%) 97
Transcriptome 4 h 313 123 (74.1%) 166
Transcriptome 8 h 256 89 (65.0%) 137
Proteome 4 h 147 36 (75.0%) 48
Proteome 8 h 124 30 (63.8%) 47
Secretome 8 h 293 42 (93.3%) 45
Overall regulatory module 894 343 (59.6%) 576
  1. Comparison of ModuleDiscoverer (MD) and KeyPathwayMiner (KPM) regarding their number of module components. The overlap is defined as fraction of the intersection of the respective datasets from the KPM datasets