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Fig. 6 | BMC Systems Biology

Fig. 6

From: MISC: missing imputation for single-cell RNA sequencing data

Fig. 6

t-SNE analysis on imputed single-cell RNA-seq reveals cell populations of the primary somatosensory cortex and the hippocampal CA1 region of mouse brain cells. All types of these stem cells are interneurons in red (n = 290), pyramidal SS in yellow (n = 399), pyramidal CA1 in blue (n = 939), oligodendrocytes in cyan (n = 820), microglia in black (n = 98), endothelial-mural in teal (n = 235) and astrocytes-ependymal in pink (n = 224). Red ovals focus on the group of oligodendrocyte cells. a The t-SNE analysis on the mouse brain cell data without missing data imputation. b The t-SNE analysis on the mouse brain cell data using the mean-smooth method with neighbor cells on the trajectory. c The t-SNE analysis on mouse brain cell data using the MISC method

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