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Table 7 Top 15 gene sets in 4th ranked superset in LUAD survival analysis

From: GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

Gene Set Terms P-valuea gsScore Weightb
SWEET_LUNG_CANCER_KRAS_DN 0.7304 0.780 −0.185
ZHANG_BREAST_CANCER_PROGENITORS_UP 0.0248 0.256 0.096
ROZANOV_MMP14_TARGETS_UP 0.1038 0.161 0.103
MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN 0.0058 0.157 −0.117
ACEVEDO_FGFR1_TARGETS_IN_PROSTATE_CANCER_MODEL_DN 0.0988 0.154 0.114
YOSHIMURA_MAPK8_TARGETS_DN 0.0195 0.150 −0.126
DELYS_THYROID_CANCER_DN 0.0065 0.125 −0.079
SWEET_LUNG_CANCER_KRAS_UP 0.2762 0.122 0.141
OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_DN 0.0132 0.101 0.120
GROSS_HYPOXIA_VIA_ELK3_UP 5.21 × 10−4 0.100 0.058
WATTEL_AUTONOMOUS_THYROID_ADENOMA_UP 0.1555 0.096 −0.089
VERHAAK_GLIOBLASTOMA_MESENCHYMAL 0.7314 0.095 0.113
PHONG_TNF_RESPONSE_NOT_VIA_P38 0.0972 0.093 −0.121
RUTELLA_RESPONSE_TO_HGF_UP 0.7217 0.091 −0.055
IWANAGA_CARCINOGENESIS_BY_KRAS_PTEN_UP 0.0249 0.090 0.088
  1. aThe P-value of gene set log-rank. bThe weight in the model corresponding to the connection of a gene set to the superset