GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

BMC Systems Biology

Table 8 The statistical information of GSAE outputs between the training and test TCGA data sets of four cancer types

Supersets/gene sets with log-rank P-value < 0.05 were selected as prognostic significant sets. ^aJaccard index of significant supersets between training and test data. ^bJaccard index of significant gene sets between training and test data. ^cSuperset proportion: (# of overlapped significant supersets between training and test data) over (# of significant supersets in training data). ^dGene set proportion: (# of overlapped significant gene sets between training and test data) over (# of significant gene sets in training data). ^eThe P-value of z-test comparing superset and gene set proportions

ISSN: 1752-0509