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Fig. 1 | BMC Systems Biology

Fig. 1

From: Integrating proteomic and phosphoproteomic data for pathway analysis in breast cancer

Fig. 1

A workflow of integrating proteomic and phosphoproteomic data in pathway analysis. Firstly, the fold change of the two protein lists from proteomic and phosphoproteomic respectively were summed up. The interaction of the DE proteins and the DE phosphoproteins were also recorded. Secondly, we performed ORA, GSEA and SPIA pathway analysis by using the integrated information, and obtained the ranks of the target pathways. Finally, the methods were evaluated by the ranks of the target pathways

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