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Table 2 Average performance of the evaluated multiple reference-based scaffolders on the five testing datasets

From: Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements

Scaffolder Sen. Pre. F-score Cov. NGA50 #Scaf. Time
Multi-CSAR (NUCmer) 89.6 90.8 90.2 93.2 1,038,257 9 1.7
Multi-CSAR (PROmer) 89.3 90.4 89.8 92.5 1,016,308 7 6.3
Ragout 79.0 92.5 84.4 87.4 992,966 84 24.8
MeDuSa 78.2 81.9 80.0 83.3 671,001 26 3.8
  1. The values of sensitivity (abbreviated as ‘Sen.’), precision (abbreviated as ‘Pre.’), F-score and genome coverage (abbreviated as ‘Cov.’) are displayed in percentage (%), and the size of NGA50 in base pairs (bp). The column ‘#Scaf.’ gives the number of scaffolds returned by each scaffolder and the column ‘Time’ displays the running time in minutes. The best result in each column is shown in bold