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Table 3 Average performance of Multi-CSAR on the five testing datasets when using the sequence identity-based weighting scheme

From: Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements

Scaffolder

Sen.

Pre.

F-score

Cov.

NGA50

#Scaf.

Time

Multi-CSAR (NUCmer)

89.9

91.3

90.6

93.5

1,046,288

10

1.7

Multi-CSAR (PROmer)

89.4

90.5

89.9

92.8

1,045,489

7

6.3

  1. The values of sensitivity (abbreviated as ‘Sen.’), precision (abbreviated as ‘Pre.’), F-score and genome coverage (abbreviated as ‘Cov.’) are displayed in percentage (%), and the size of NGA50 in base pairs (bp). The column ‘#Scaf.’ gives the number of resulting scaffolds and the column ‘Time’ displays the running time in minutes. The best result in each column is shown in bold