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Table 4 The Kendall’s W on MSigDB C4 v6.0 and breast cancer subtype gene expression data

From: Optimizing gene set annotations combining GO structure and gene expression data

Kendall’s W HER2-enriched subtype Luminal A subtype Luminal B subtype Normal-like subtype
The proposed method 0.978 0.980 0.984 0.963
The EMVC algorithm 0.979 0.980 0.985 0.961
Unoptimized annotations 0.969 0.969 0.978 0.935