Table 4 The Kendall’s W on MSigDB C4 v6.0 and breast cancer subtype gene expression data
From: Optimizing gene set annotations combining GO structure and gene expression data
Kendall’s W | HER2-enriched subtype | Luminal A subtype | Luminal B subtype | Normal-like subtype |
|---|---|---|---|---|
The proposed method | 0.978 | 0.980 | 0.984 | 0.963 |
The EMVC algorithm | 0.979 | 0.980 | 0.985 | 0.961 |
Unoptimized annotations | 0.969 | 0.969 | 0.978 | 0.935 |