Fig. 1
From: GNE: a deep learning framework for gene network inference by aggregating biological information
An illustration of gene network embedding (GNE). GNE integrates gene interaction network and gene expression data to learn a lower-dimensional representation.The nodes represent genes, and the genes with the same color have similar expression profiles. GNE groups genes with similar network topology, which are connected or have a similar neighborhood in the graph, and attribute similarity (similar expression profiles) in the embedded space