Fig. 3From: GNE: a deep learning framework for gene network inference by aggregating biological informationVisualization of learned embeddings for genes on E. coli. Genes are mapped to the 2D space using the t-SNE package [32] with learned gene representations (yi,i=1,2,…,M) from different methods: a GNE, b LINE, and c node2vec as input. Operons 3203, 3274, 3279, 3306, and 3736 of E. coli are visualized and show clustering patterns. Best viewed on screenBack to article page