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Table 6 New gene interactions that are assigned high probability by GNE

From: GNE: a deep learning framework for gene network inference by aggregating biological information

Organism Probability Gene i Gene j Experimental evidence code
  Topology Topology + Expression    
Yeast 0.287 0.677 TFC8 DHH1 Affinity Capture-RNA [35]
  0.394 0.730 SYH1 DHH1 Affinity Capture-RNA [35]
  0.413 0.746 CPR7 DHH1 Affinity Capture-RNA [35]
  0.253 0.551 MRP10 DHH1 Affinity Capture-RNA [35]
  0.542 0.835 RPS13 ULP2 Affinity Capture-MS [36]
E. coli 0.014 0.944 ATPB RFBC Affinity Capture-MS [37]
  0.012 0.941 NARQ CYDB Affinity Capture-MS [37]
  0.013 0.937 PCNB PAND Affinity Capture-MS [37]
  0.015 0.939 FLIF CHEY Affinity Capture-MS [37]
  0.017 0.938 YCHM PROB Affinity Capture-MS [37]
  1. New gene interactions on 2018 version that are assigned high probability by GNE after integration of expression data. We provide probability predicted by GNE (with/without expression data) for new interactions in the 2018 version and evidence supporting the existence of predicted interactions