Table 1 Performance of predicting GRN with different PPINs on 30 yeast genes ground-truth network
Method | TP | FP | FN | Prec.(%) | Rec.(%) | F1(%) | AUROC | AUPR |
|---|---|---|---|---|---|---|---|---|
Raw PPIN | 165 | 95 | 152 | 63.46 | 52.05 | 57.19 | 0.698 | 0.591 |
Extended PPIN (subnet) | 229 | 220 | 88 | 51.00 | 72.24 | 59.79 | 0.713 | 0.533 |
Extended PPIN (global) | 240 | 260 | 77 | 48.00 | 75.71 | 58.75 | 0.696 | 0.500 |