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Table 1 Performance of predicting GRN with different PPINs on 30 yeast genes ground-truth network

From: Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks

Method TP FP FN Prec.(%) Rec.(%) F1(%) AUROC AUPR
Raw PPIN 165 95 152 63.46 52.05 57.19 0.698 0.591
Extended PPIN (subnet) 229 220 88 51.00 72.24 59.79 0.713 0.533
Extended PPIN (global) 240 260 77 48.00 75.71 58.75 0.696 0.500
  1. Best performance measures that are significantly different are shown in bold