Skip to main content

Advertisement

Table 3 Performance of GRNs generated from the BGM with different priors on 30 yeast genes ground-truth network

From: Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks

Method TP FP FN Prec.(%) Rec.(%) F1(%) AUROC AUPR Time(sec)
BGM 139 201 178 40.88 43.85 42.31 0.553 0.390 636
BGM (GMM) 185 293 132 38.70 58.36 46.54 0.555 0.383 606
BGM (C scores) 170 150 147 53.13 53.63 53.38 0.653 0.490 518
Nariai et al. (GHMM) 176 273 141 39.20 55.52 45.95 0.570 0.408 1174
Imoto et al. (GHMM) 184 293 133 38.57 58.04 46.35 0.565 0.401 1150
BGM (R scores) 202 237 115 46.01 63.72 53.44 0.627 0.446 608
  1. Best performance measures that are significantly different are shown in bold