Volume 1 Supplement 1

BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology

Meeting abstracts

Edited by John Cumbers, Xu Gu, Jong Sze Wong

BioSysBio 2007: Systems Biology, Bioinformatics and Synthetic Biology. Go to conference site.

Manchester, UK11-13 January 2007

Vol 1 Suppl 1 concatenated PDF

Page 2 of 2

Computational simulations of interactions of the κ-hefutoxin1 with the voltage-gated potassium ion channels

Authors: M Zarrabi and H Naderi-Manesh

Citation: BMC Systems Biology 2007 1(Suppl 1):P36

Content type: Poster presentation

Published on: 8 May 2007
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Fungal volatile fingerprints and machine learning: potential of discriminating and classifying dermatophyte species

Authors: Natasha Sahgal, Barry Monk, Mohammad Wasil and Naresh Magan

Citation: BMC Systems Biology 2007 1(Suppl 1):P37

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Published on: 8 May 2007
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ECOLITASTER: cellular biosensor

Authors: Guillermo Rodrigo, Javier Carreral and Alfonso Jaramillo

Citation: BMC Systems Biology 2007 1(Suppl 1):P38

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Published on: 8 May 2007
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Progress toward the construction of a tri-stable genetic toggle switch in E. coli

Authors: Jason Lohmueller, Brendan Hickey, Azeem Kaka, Annie Gao, Jamie Lemon, Victoria Lattanzi, Peter Goldstein, Lick-Kong Tam, Meghan Schmidt, John Cumbers, James Gagnon, Hayato Urabe, Ana Jaklenec and Gary Wessel

Citation: BMC Systems Biology 2007 1(Suppl 1):P39

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Published on: 8 May 2007
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Molecules for memory: modelling CaMKII

Authors: Melanie Stefan and Nicolas Le Novere

Citation: BMC Systems Biology 2007 1(Suppl 1):P40

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Published on: 8 May 2007
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Computational modelling of chemotaxis in cooperative phenomena in bacterial populations

Authors: Vinayak Doraiswamy, Martin Buist and Andrew Goryachev

Citation: BMC Systems Biology 2007 1(Suppl 1):P41

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Published on: 8 May 2007
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DNA interaction with sperm cells: ODE model

Authors: Andrew Kuznetsov

Citation: BMC Systems Biology 2007 1(Suppl 1):P42

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Metabolic flux analysis for directing metabolism of Streptomyces olindensis from growth to anti-tumor drug (cosmomycin) production

Authors: Ana Katerine de Carvalho Lima Lobato, Raul Munoz-Hernandez, Renata L Araujo Furlan, Gabriel Padilla, Leandro M Garrido, Gorete Ribeiro de Macedo and Ferda Mavituna

Citation: BMC Systems Biology 2007 1(Suppl 1):P43

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Published on: 8 May 2007
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Context sensitivity in individual-based modeling

Authors: Chih-Chun Chen, Christopher D Clack and Sylvia B Nagl

Citation: BMC Systems Biology 2007 1(Suppl 1):P44

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Huntington's disease: from experimental results to interaction networks, patho-pathway construction and disease hypothesis

Authors: Eduardo Gonzalez-Couto, Silvia Matteoni, Stefano Gotta, Letizia Magnoni, Freddy Heitz, Roberto Raggiaschi, Georg C Terstappen and Andreas Kremer

Citation: BMC Systems Biology 2007 1(Suppl 1):P45

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Kinetic constraints on the sensitivity of large metabolic responses

Authors: Fernando Ortega and Luis Acerenza

Citation: BMC Systems Biology 2007 1(Suppl 1):P46

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Published on: 8 May 2007
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A computational tool for directing Taxus spp. cell culture metabolism from growth to Taxol^®, a diterpene alkaloid, production

Authors: Khairiah Abd-Karim, Radia Chibani and Ferda Mavituna

Citation: BMC Systems Biology 2007 1(Suppl 1):P47

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PFF – an integrated database of residues and fragments critical for protein folding

Authors: Manuel Corpas, James Sinnott, Dave Thorne, Steve Pettifer and Terri Attwood

Citation: BMC Systems Biology 2007 1(Suppl 1):P48

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Discrimination of proteins using graph theoretic properties

Authors: Alper Küçükural and O Ugur Sezerman

Citation: BMC Systems Biology 2007 1(Suppl 1):P49

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Molecular dynamics simulations studies of aurein 1.2 analogs in water and TFE/water

Authors: Safiyeh Soofian and Hossin Naderimanesh

Citation: BMC Systems Biology 2007 1(Suppl 1):P50

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Published on: 8 May 2007
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Visualising protein interaction networks with power graphs

Authors: Loïc Royer, Matthias Reimann, Bill Andreopoulos and Michael Schroeder

Citation: BMC Systems Biology 2007 1(Suppl 1):P51

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Modelling the evolution of transcriptional control networks using stochastic simulations and evolutionary computational methods

Authors: Dafyd Jenkins and Dov Stekel

Citation: BMC Systems Biology 2007 1(Suppl 1):P52

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Published on: 8 May 2007
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Less is more: the battle of Moore's law against Bremermann's limit on the field of systems biology

Authors: Derek Gatherer

Citation: BMC Systems Biology 2007 1(Suppl 1):P53

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Published on: 8 May 2007
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Docking study on mammalian CTR1 copper importer motifs

Authors: Evgeny Zatulovskiy, Sergey Samsonov and Alexej Skvortsov

Citation: BMC Systems Biology 2007 1(Suppl 1):P54

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A Cys-capping motif unique to small leucine-rich repeat proteins and proteoglycans of the extracellular matrix

Authors: Hosil Park, Julie Huxley-Jones, Teresa Attwood and Jordi Bella

Citation: BMC Systems Biology 2007 1(Suppl 1):P55

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Predicting gene co-expression from CIS-regulatory regions

Authors: Jamie Allen, Mark Shirley, Steve Rushton, Ajay Kohli and Ehsan Mesbahi

Citation: BMC Systems Biology 2007 1(Suppl 1):P56

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Gene regulatory network of human adipocyte differentiation

Authors: Judit Kumuthini, Conrad Bessant, Paul Wilson and Daniel Crowther

Citation: BMC Systems Biology 2007 1(Suppl 1):P57

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On the correlation between drug-resistant pattern of HIV-1 protease inhibitors and binding free energy and structural changes

Authors: Kitiyaporn Wittayanarakul, Supot Hannongbua and Michael Feig

Citation: BMC Systems Biology 2007 1(Suppl 1):P58

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Published on: 8 May 2007
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Similarity in expression accounts for correlated evolution of interacting proteins

Authors: Luke Hakes, Simon C Lovell, Stephen G Oliver and David L Robertson

Citation: BMC Systems Biology 2007 1(Suppl 1):P59

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Computer aided multi-parameter gene design: impact of synthetic dnas on protein expression enhancement

Authors: Frank Notka, Doris Leikam, Asli Bauer, David Raab, Marcus Graf and Ralf Wagner

Citation: BMC Systems Biology 2007 1(Suppl 1):P60

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A parallel algorithm for de novo peptide sequencing

Authors: Elisa Mori, Sara Brunetti, Sonia Campa and Elena Lodi

Citation: BMC Systems Biology 2007 1(Suppl 1):P61

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Published on: 8 May 2007
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A Bayesian framework for integrating genomic data to aid function prediction

Authors: Chris Bridson and Richard J Morris

Citation: BMC Systems Biology 2007 1(Suppl 1):P62

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Published on: 8 May 2007
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Inferring context-sensitive Probabilistic Boolean Networks from gene expression data under multi-biological conditions

Authors: Le Yu and Stephen Marshall

Citation: BMC Systems Biology 2007 1(Suppl 1):P63

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Published on: 8 May 2007
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Simulating epidermal growth factor receptor interaction with ligand

Authors: Emmet McIntyre

Citation: BMC Systems Biology 2007 1(Suppl 1):P64

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Mathematical modelling of multi-site protein-ligand interactions

Authors: Najl V Valeyev, Nikolai V Kotov, Ian Postlethwaite and Declan Bates

Citation: BMC Systems Biology 2007 1(Suppl 1):P65

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Prediction and ranking of human protein-protein interactions within a Bayesian framework

Authors: Michelle S Scott and Geoffrey J Barton

Citation: BMC Systems Biology 2007 1(Suppl 1):P66

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Published on: 8 May 2007
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Microarrays expression measurement

Authors: Richard Pearson

Citation: BMC Systems Biology 2007 1(Suppl 1):P67

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Design of novel semisynethetic metalloenzyme from thermolysin

Authors: Mohd Basyaruddin Abdul Rahman, Ahmad Haniff Jaafar, Mahiran Basri, Raja Noor Zaliha Raja Abdul Rahman, Abu Bakar Salleh and Habibah Abdul Wahab

Citation: BMC Systems Biology 2007 1(Suppl 1):P68

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Using the protein interaction network to predict protein folds without homology

Authors: Ramazan Saeed and Charlotte M Deane

Citation: BMC Systems Biology 2007 1(Suppl 1):P69

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Data mining techniques in a CGH-based breast cancer subtype profiling: an immune perspective with comparative study

Authors: Filippo Menolascina, Stefania Tommasi, Patrizia Chiarappa, Vitoantonio Bevilacqua, Giuseppe Mastronardi and Angelo Paradiso

Citation: BMC Systems Biology 2007 1(Suppl 1):P70

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Modelling the comet assay

Authors: Darragh McArt, Robert Cairns, Gillian Wasson and Kurt Saetzler

Citation: BMC Systems Biology 2007 1(Suppl 1):P71

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Published on: 8 May 2007
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The NetBuilder' project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks

Authors: Katja Wegner, Johannes Knabe, Mark Robinson, Attila Egri-Nagy, Maria Schilstra and Chrystopher Nehaniv

Citation: BMC Systems Biology 2007 1(Suppl 1):P72

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Binding site locations and interaction of the isolated middle loop of snake neurotoxin I with muscle type nicotinic acetylcholine receptor: molecular dynamics and docking simulation study

Authors: Adak Nasiripourdori, Bijan Ranjbar and Hossein Naderi-manesh

Citation: BMC Systems Biology 2007 1(Suppl 1):P73

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Applications of sensitivity analysis for drug discovery and development in the ErbB receptor network

Authors: B Harms, A Lee, R Paxson, UB Nielsen and B Schoeberl

Citation: BMC Systems Biology 2007 1(Suppl 1):P74

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Identification of phenotypes in patient microarrays

Authors: J Keith Vass, Gabriela Kalna and Des J Higham

Citation: BMC Systems Biology 2007 1(Suppl 1):P75

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Rate control analysis of the translation initiation pathway in S. cerevisiae

Authors: Padchanee Sangthong, John MX Hughes and John EG McCarthy

Citation: BMC Systems Biology 2007 1(Suppl 1):P76

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Flux balance analysis and its applications

Authors: Balazs Papp and Evangelos Simeonidis

Citation: BMC Systems Biology 2007 1(Suppl 1):P77

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A probabilistic context-free grammar for the detection of binding sites from a protein sequence

Authors: Witold Dyrka and Jean-Christophe Nebel

Citation: BMC Systems Biology 2007 1(Suppl 1):P78

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Published on: 8 May 2007
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Registry of BioBricks models using CellML

Authors: Vincent Rouilly, Barry Canton, Poul Nielsen and Richard Kitney

Citation: BMC Systems Biology 2007 1(Suppl 1):P79

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Published on: 8 May 2007
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ChIPMonk: software for viewing and analysing ChIP-on-chip data

Authors: Simon R Andrews

Citation: BMC Systems Biology 2007 1(Suppl 1):P80

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Published on: 8 May 2007
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Function prediction of a newly extracted protein from a newly extracted lassa virus gene

Authors: LE Okoror, HT Alaiya and P Aliga

Citation: BMC Systems Biology 2007 1(Suppl 1):P81

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Published on: 8 May 2007
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Estrategic aspects by technology transfer from the academic and business development of the bioinformatics in Costa Rica and the central American region

Authors: Allan Orozco

Citation: BMC Systems Biology 2007 1(Suppl 1):P82

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Published on: 8 May 2007
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Modeling the arsenic biosensor system

Authors: Yizhi Cai, Bryony Davidson, Hongwu Ma and Chris French

Citation: BMC Systems Biology 2007 1(Suppl 1):P83

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Published on: 8 May 2007
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Unraveling functional networks: does gene clustering have a meaning?

Authors: Olga Vasieva and Roland Wolf

Citation: BMC Systems Biology 2007 1(Suppl 1):P84

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Published on: 8 May 2007
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BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology

Meeting abstracts

BMC Systems Biology

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