Table 2 List of Abbreviations
From: Exploiting the pathway structure of metabolism to reveal high-order epistasis
Abbreviation | Full Name | Abbreviation | Full Name |
|---|---|---|---|
2dr1p | 2-Deoxy-D-ribose 1-phosphate | agpe_EC | acyl-glycerophospoethanolamine (E. coli) ** |
2dr5p | 2-Deoxy-D-ribose 5-phosphate | apg_EC | acyl phosphatidylglycerol (E. coli) ** |
3HCINNMH | 3-hydroxycinnamate hydroxylase | asp-L | L-Aspartate |
3HPPPNH | 3-(3-hydroxy-phenyl)propionate hydroxylase | aspsa | L-Aspartate 4-semialdehyde |
3hcinnm | 3-hydroxycinnamic acid | atp | ATP |
3hcinnm [e] | 3-hydroxycinnamic acid (Extracellular) | cechddd | cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol |
3hpppn | 3-(3-hydroxy-phenyl)propionate | dhcinnm | 2,3-dihydroxicinnamic acid |
3hpppn [e] | 3-(3-hydroxy-phenyl)propionate (Extracellular) | dhpppn | 3-(2,3-Dihydroxyphenyl)propanoate |
4h2opntn | 4-Hydroxy-2-oxopentanoate | etha | Ethanolamine |
4pasp | 4-Phospho-L-aspartate | fum | Fumarate |
ACALDt | acetaldehyde reversible transport | g3p | Glyceraldehyde 3-phosphate |
ASAD | aspartate-semialdehyde dehydrogenase | g3pe | sn-Glycero-3-phosphoethanolamine |
ASPK | aspartate kinase | gly | Glycine |
DHCINDO | 2,3-dihydroxycinnamate 1,2-dioxygenase | glyc3p | Glycerol 3-phosphate |
DHPPD | 2,3-dihydroxyphenylpropionate dehydrogenase | h | H+ |
DRPA | deoxyribose-phosphate aldolase | h2o | H2O |
ETHAAL | Ethanolamine ammonia-lyase | h [e] | H+ (Extracellular) |
GPDDA2 | Glycerophosphodiester phosphodiesterase | hdca | Hexadecanoate (n-C16:0) |
HCINNMt2r | 3-hydroxycinnamic acid transport | hdcea | hexadecenoate (n-C16:1) |
HKNDDH | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | hkndd | 2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate |
HKNTDH | 2-hydroxy-6-ketononotrienedioate hydrolase | hkntd | 2-hydroxy-6-ketononatrienedioate |
HOPNTAL | 4-hydroxy-2-oxopentanoate aldolase | hom-L | L-Homoserine |
HPPPNDO | 2,3-dihydroxypheylpropionate 1,2-dioxygenase | na1 | Sodium |
HPPPNt2r | 3-(3-hydroxyphenyl)propionate transport | na1 [e] | Sodium (Extracellular) |
HSDy | homoserine dehydrogenase (NADPH) | nad | Nicotinamide adenine dinucleotide |
HSK | homoserine kinase | nadh | Nicotinamide adenine dinucleotide – reduced |
LPLIPA2 | Lysophospholipase L (acyl-glycerophosphoethanolamine) | nadp | Nicotinamide adenine dinucleotide phosphate |
LPLIPA4 | Lysophospholipase L (acyl transfer to phosphatidylglycerol) | nadph | Nicotinamide adenine dinucleotide phosphate – reduced |
NAt3_1 | sodium proton antiporter (H:NA is 1:1) | nh4 | ammonium |
NAt3_1.5 | sodium proton antiporter (H:NA is 1.5) | o2 | O2 |
NAt3_2 | sodium proton antiporter (H:NA is 2) | o2 [e] | O2 (Extracellular) |
O2t | o2 transport (diffusion) | ocdcea | octadecenoate (n-C18:1) |
OP4ENH | 2-oxopent-4-enoate hydratase | op4en | 2-Oxopent-4-enoate |
PLIPA2 | Phosphlipase A (phosphatidylethanolamine) | pe_EC | Phosphatidylethanolamine (Ecoli) ** |
PPM2 | phosphopentomutase 2 (deoxyribose) | pg_EC | Phospatidylglycerol (Ecoli) ** |
PPPNDO | Phenylpropanoate Dioxygenase | phom | O-Phospho-L-homoserine |
PPPNt2r | 3-phenylpropionate transport | pi | Phosphate |
THRAr | Threonine Aldolase | pppn | Phenylpropanoate |
THRS | threonine synthase | pppn [e] | Phenylpropanoate (Extracellular) |
THRabc | L-threonine transport via ABC system | pyr | Pyruvate |
THRt2r | L-threonine reversible transport via proton symport | succ | Succinate |
THRt4 | L-threonine via sodium symport | thr-L | L-Threonine |
acald | Acetaldehyde | thr-L [e] | L-Threonine (Extracellular) |
acald [e] | Acetaldehyde (Extracellular) | ttdca | tetradecanoate (n-C14:0) |
adp | ADP | ttdcea | tetradecenoate (n-C14:1) |