Figure 6

Conversion results and simulation based on CH000000006, a pathway in TP. (a) PathwayBuilder view from TRANSPATH. (b) Cell Illustrator view after conversion: The pathway is loaded into CI and drawn by default layout algorithm. (c) Simulation results with assigned parameters during conversion in Cell Illustrator. The chart shows the changes of molecule concentration along with those of time. The y-axis shows relative molecules' concentrations without units. The x-axis shows the changes of time. The needed values are automatically assigned during conversion for basic usage. (d) Simulation results with adjusted parameters in Cell Illustrator. The same notations are used as (c). The user can adjust the values during investigation and the results such as the changes of concentration with time will be saved into CSML. Note that this chart does not correspond to the experimental results.