Table 1 A list and additional relevant information of all genes belonging to the Asp-family and the aromatic amino acids (AAA) networks analyzed in this report.
From: Coordinations between gene modules control the operation of plant amino acid metabolic networks
Pathway | Enzyme | Stepa | Symbole | ATGb | Probesetc |
|---|---|---|---|---|---|
Lys met. | monofunctional aspartate kinase | 1 | AKd | AT3G02020 | 258977_s_at |
| Â | Â | Â | AKd | AT5G14060 | 258977_s_at |
| Â | Â | Â | AK1 | AT5G13280 | 250291_at |
| Â | aspartate-semialdehyde dehydrogenase | 2 | ASD | AT1G14810 | 262841_at |
| Â | dihydrodipicolinate synthase | 3 | DHDPS1 | AT3G60880 | 251392_at |
| Â | Â | Â | DHDPS2 | AT2G45440 | 245145_at |
| Â | dihydrodipicolinate reductase | 4 | DHDPR | AT2G44040 | 267237_s_at |
| Â | Â | Â | DHDPR | AT3G59890 | 267237_s_at |
| Â | Â | Â | DHDPR | AT5G52100 | 248402_at |
| Â | L, L-diaminopimelate aminotransferase | 5 | AGD2 | AT4G33680 | 253308_at |
| Â | diaminopimelate epimerase | 6 | DAPE | AT3G53580 | 251948_at |
| Â | diaminopimelate decarboxylase | 7 | DAPDd | AT3G14390 | 258365_s_at |
| Â | Â | Â | DAPDd | AT5G11880 | 258365_s_at |
| Â | lysine-ketoglutarate reductase/saccharopine dehydrogenase | 8 | LKR/SDHd | AT4G33150 | 253373_at |
Met met. | aspartate kinase/homoserine dehydrogenase | 9 | AK/HSDH1d | AT1G31230 | 263696_at |
| Â | Â | Â | AK/HSDH2 | AT4G19710 | 254535_at |
| Â | aspartate-semialdehyde dehydrogenase | 2 | ASD | AT1G14810 | 262841_at |
| Â | homoserine kinase | 10 | HSK | AT2G17265 | 264855_at |
|  | cystathionine γ synthase | 11 | CGS1d | AT3G01120 | 259279_at |
| Â | Â | Â | CGS | AT1G33320 | 256531_at |
|  | cystathionine β lyase | 12 | CBL | AT3G57050 | 251666_at |
| Â | methionine synthase | 13 | MS1 | AT5G17920 | 259343_s_at |
| Â | Â | Â | MS2 | AT3G03780 | 259343_s_at |
| Â | Â | Â | MS3 | AT5G20980 | 246185_at |
| Â | homocysteine S-methyltransferase | 14 | HMT1 | AT3G25900 | 258075_at |
| Â | Â | Â | HMT2 | AT3G63250 | 251175_at |
| Â | Â | Â | HMT3 | AT3G22740 | 258322_at |
| Â | S-adenosylmethionine synthetase | 15 | SAMS1 | AT1G02500 | 260913_at |
| Â | Â | Â | SAMS2 | AT4G01850 | 255552_at |
| Â | Â | Â | SAMS3d | AT3G17390 | 258415_at |
| Â | Â | Â | SAMS4 | AT2G36880 | 263838_at |
|  | methionine γ lyase | 16 | MGLd | AT1G64660 | 261957_at |
| Â | methylthioalkylmalate synthase | 17 | MAM1d | AT5G23010 | 249866_at |
| Â | Â | Â | MAMLd | AT5G23020 | 249867_at |
| Â | methionine-oxo-acid transaminase | Â | BCAT4d | AT3G19710 | 257021_at |
Thr met. | aspartate kinase/homoserine dehydrogenase | 9 | AK/HSDH1 | AT1G31230 | 263696_at |
| Â | Â | Â | AK/HSDH2 | AT4G19710 | 254535_at |
| Â | aspartate-semialdehyde dehydrogenase | 2 | ASD | AT1G14810 | 262841_at |
| Â | homoserine kinase | 10 | HSK | AT2G17265 | 264855_at |
| Â | threonine synthase | 18 | TS | AT1G72810 | 262380_at |
| Â | Â | Â | TS | AT4G29840 | 253700_at |
| Â | threonine aldolase | 19 | THA1d | AT1G08630 | 264777_at |
| Â | Â | Â | THA2 | AT3G04520 | 258599_at |
Ile met. | threonine deaminase | 20 | TD | AT3G10050 | 258884_at |
| Â | acetolactate synthase | 21 | AHASS1 | AT2G31810 | 263460_at |
| Â | Â | Â | AHASS2 | AT5G16290 | 250111_at |
| Â | Â | Â | AHAS | AT3G48560 | 252325_at |
| Â | ketol-acid reductoisomerase | 22 | KARI | AT3G58610 | 251536_at |
| Â | branched-chain aminoacid aminotransferase | 23 | BCAT1 | AT1G10060 | 264525_at |
| Â | Â | Â | BCAT2d | AT1G10070 | 264524_at |
| Â | Â | Â | BCAT3d | AT3G49680 | 252274_at |
| Â | Â | Â | BCAT5 | AT5G65780 | 247158_at |
| Â | Â | Â | BCAT6 | AT1G50110 | 261636_at |
| Â | Â | Â | BCAT7 | AT1G50090 | 261690_at |
Trp met. | anthranilate synthase β | 24 | ASBd | AT1G24807 | 247864_s_at |
| Â | Â | Â | ASBd | AT1G24909 | 247864_s_at |
| Â | Â | Â | ASBd | AT1G25083 | 247864_s_at |
| Â | Â | Â | ASBd | AT1G25155 | 247864_s_at |
| Â | Â | Â | ASBd | AT1G25220 | 247864_s_at |
| Â | Â | Â | ASBd | AT5G57890 | 247864_s_at |
| Â | anthranilate synthase a | 25 | ASA1d | AT5G05730 | 250738_at |
| Â | Â | Â | ASA2 | AT2G29690 | 266671_at |
| Â | Â | Â | ASA | AT3G55870 | 251716_at |
| Â | anthranilate phosphoribosyltransferase | 26 | TRP | AT1G70570 | 260311_at |
| Â | Â | Â | TRP1 | AT5G17990 | 250014_at |
| Â | phosphoribosylanthranilate isomerase | 27 | PAI1 | AT1G07780 | 259770_s_at |
| Â | Â | Â | PAI2 | AT5G05590 | 259770_s_at |
| Â | Â | Â | PAI3 | AT1G29410 | 259770_s_at |
| Â | indole-3-glycerol phosphate synthase | 28 | IGPSd | AT2G04400 | 263807_at |
| Â | Â | Â | IGPS | AT5G48220 | 248688_at |
| Â | tryptophan synthase a | 29 | TSA2d | AT3G54640 | 251847_at |
| Â | Â | Â | TSA | AT4G02610 | 255487_at |
|  | tryptophan synthase β | 30 | TSB1d | AT5G54810 | 253898_s_at |
| Â | Â | Â | TSB2d | AT4G27070 | 253898_s_at |
| Â | Â | Â | TSB | AT5G38530 | 249515_at |
| Â | cytochrome P450 | 31 | CYP79B3 | AT2G22330 | 264052_at |
| Â | Â | Â | CYP79B2d | AT4G39950 | 252827_at |
Phe & Tyr met. | chorismate mutase | 32 | CM1 | AT3G29200 | 257746_at |
| Â | Â | Â | CM2 | AT5G10870 | 250407_at |
| Â | Â | Â | CM3 | AT1G69370 | 260360_at |
| Â | arogenate dehydrogenase | 33 | AAT1 | AT5G34930 | 255859_at |
| Â | Â | Â | AAT2 | AT1G15710 | 259486_at |
| Â | tyrosine aminotransferase | 34 | TAT3d | AT2G24850 | 263539_at |
| Â | Â | Â | TAT | AT5G53970 | 248207_at |
| Â | prephenate dehydratase | 35 | PD1 | AT2G27820 | 266257_at |
| Â | Â | Â | PD | AT1G08250 | 261758_at |
| Â | Â | Â | PD | AT1G11790 | 262825_at |
| Â | Â | Â | PD | AT3G07630 | 259254_at |
| Â | Â | Â | PDd | AT3G44720 | 252652_at |
| Â | Â | Â | PD | AT5G22630 | 249910_at |
| Â | phenylalanine ammonia-lyase | 36 | PAL1d | AT2G37040 | 263845_at |
| Â | Â | Â | PAL2d | AT3G53260 | 251984_at |
| Â | Â | Â | PAL3 | AT5G04230 | 245690_at |