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Table 1 Comparison of predicted in silico virulence with experimentally determined in vivo virulence

From: Systems approach to investigating host-pathogen interactions in infections with the biothreat agent Francisella. Constraints-based model of Francisella tularensis

LVS locus

Schu4 locus

Gene

Virulence

   

in silico

in vivo

FTL_1071

FTT_1019c

guaA

+

+

FTL_1478

FTT_1317c

guaB

+

+

FTL_0395

FTT_0893

purM

+

+

FTL_0396

FTT_0894

purCD

+

+

FTL_1504

FTT_0721c

katG

-

+

FTL_1791

FTT_0068

sodB

-

+

FTL_0483

FTT_0413c

glgB

-

+

FTL_1262

FTT_0945

 

+

+

FTL_0838

FTT_1124

metN

+

+

FTL_0837

FTT_1125

metIQ

+

+

FTL_0789

FTT_1165c

aspC2

-

+

FTL_0606

FTT_1450

wbtM

-

+

FTL_0594

FTT_1462c

wbtC

-

+

FTL_0592

FTT_1464c

wbtA

-

+

FTL_0304

FTT_1490

 

-

+

FTL_1701

FTT_1631c

gplX

-

+

FTL_0058

FTT_1168

 

+

+

  1. Accuracy of iRS635 virulence prediction = 47%