Table 4 Minimum Risk extension of base classifiers on different feature-sets
Feature | Average CCR (Corr. Coef.) % | ||
|---|---|---|---|
| Â | Min Risk KNN | Min Risk Bayes with Gaussian | Min Risk Bayes with MDM PDF |
Amino Acid compositions | 30.2 (14.2) | 29.4 (50.0) | 28.4 (14.8) |
Dipeptides | 34.8 (26.2) | 43.5 (25.1) | 45.0 (34.0) |
PairsComp1Gap | 35.7 (26.9) | 41.8 (27.2) | 42.7 (29.0) |
PairsComp2Gaps | 37.0 (29.6) | 41.1 (25.7) | 45.6 (33.6) |
Haralick Features | 27.9 (07.6) | 28.4 (06.1) | 26.3 (06.1) |
48 physicochemical prop. | 29.5 (13.5) | 29.0 (50.0) | 29.0 (15.5) |
Biological Process level 1 | 32.0 (19.2) | 30.4 (16.3) | 30.4 (14.9) |
Biological Process level 2 | 34.1 (25.2) | 35.7 (18.0) | 37.7 (16.5) |
Cellular level 1 | 34.2 (23.8) | 35.4 (19.0) | 36.6 (34.2) |
Cellular level 2 | 35.8 (30.3) | 34.0 (20.2) | 36.6 (31.8) |
Functional Process level 1 | 29.6 (17.3) | 28.1 (08.4) | 31.6 (14.5) |
Functional Process level 2 | 29.6 (21.9) | 33.2 (17.9) | 30.6 (15.8) |
Domains | 60.5 (57.9) | 67.5 (58.9) | 67.8 (57.1) |
Repeated Domains | 59.6 (57.0) | 67.4 (57.7) | 63.9 (55.7) |
Disordered Regions | 27.0 (07.2) | 26.1 (02.6) | 27.7 (08.9) |
PSSM-20 | 26.8 (06.1) | 26.3 (08.4) | 25.6 (01.7) |
PSSM-400 | 43.8 (33.2) | 49.8 (42.1) | 54.0 (48.0) |