Table 2 Ranks of DosR training genes ranked by motif and relevance scores.
ORF | x motif | x nonLin | x lin |
|
|
|---|---|---|---|---|---|
Rv0079 | 185 | 13 | 14 | 18 | 15 |
Rv0569 | 21 | 46 | 38 | 34 | 24 |
Rv0571c | 22 | 12 | 20 | 5 | 7 |
Rv0574c | 83 | 16 | 15 | 6 | 5 |
Rv1733c | 6 | 14 | 1 | 18 | 1 |
Rv1737c | 1 | 5 | 16 | 2 | 6 |
Rv1738 | 2 | 415 | 389 | 398 | 378 |
Rv1813c | 37 | 7 | 10 | 29 | 4 |
Rv1997 | 9 | 59 | 82 | 76 | 63 |
Rv2005c | 182 | 9 | 6 | 3 | 3 |
Rv2006 | 27 | 27 | 24 | 34 | 8 |
Rv2007c | 41 | 6 | 11 | 3 | 3 |
Rv2031c | 8 | 1 | 3 | 1 | 1 |
Rv2032 | 5 | 2 | 2 | 1 | 1 |
Rv2626c | 10 | 3 | 4 | 1 | 2 |
Rv2627c | 3 | 22 | 9 | 42 | 1 |
Rv2628 | 4 | 28 | 23 | 24 | 8 |
Rv3130c | 73 | 11 | 7 | 3 | 3 |
Rv3131 | 49 | 29 | 18 | 20 | 6 |
Rv3134c | 7 | 53 | 41 | 41 | 24 |
Rv3127 | 78 | 10 | 22 | 3 | 8 |
- The table shows the rankings of the 21 training genes with respect to different scores: x
motif
denotes motif scores, x
nonLin
stands for nonlinear scores and x
lin
linear scores in the equation (see equation 4).
and 
are the nonlinear and linear relevance scores in the leave-one-out cross validation tests which exclude the corresponding genes in the first column from estimating DosR TFA. Note that since each leave-one-out test produces its own ranking, rank numbers are not unique in the last two columns.