Table 3 Overview of iRsp1095
From: iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
Categories | No. in the reconstruction | |
|---|---|---|
Genes | 1095 | Â |
ORFs | 1049 | 96.0% |
tRNA genes | 46 | 4.0% |
Metabolites | 1096 | Â |
Unique metabolites | 796 | Â |
Cytoplasmic | 795 | Â |
Periplasmic | 151 | Â |
Extracellular | 150 | Â |
Reactions | 1158 | Â |
Enzymatic Reactions | 858 | 74.1% |
Transport reactions | 300 | 25.9% |
Reactions Associated with genes | 1049 | 90.6% |
Reactions based on experimental evidence | 203 | 17.5% |
Reactions inferred based on gene homology | 846 | 73.1% |
Spontaneous/Diffusion reactions | 14 | 1.2% |
Reactions without gene association | 95 | 8.2% |
Reactions associated with multi-protein complexes | 130 | 11.2% |
Reactions associated with isozymes | 262 | 22.6% |
Reversible Reactions | 757 | 65.4% |
Irreversible Reactions | 401 | 34.6% |
Exchange Reactions | 148 | Â |
Demand Reactions | 3 | Â |