Parameter/Data | Symbol | Distribution | Value(mode) | cv | Unit |
---|---|---|---|---|---|
RK2 abundance | D 0 | lognormal | 4.5 | 0.5 | nM |
KorA abundance | Atot | lognormal | 1600 [18] | 0. 5 | nM |
KorB abundance | Btot | lognormal | 400 [28] | 0. 5 | nM |
KorB abundance (mutant) | BMtot | lognormal | 920 | 0. 5 | nM |
Scaling parameter for KorA synthesis | π X | uniform | [0,1] | - | - |
Scaling parameter for KorB synthesis | π Y | uniform | [0,1] | - | - |
KorA synthesis | k A | - | - | - | s-1 |
KorB synthesis | k B | - | - | - | s-1 |
KorA affinity to DNA | k 1 | lognormal | 12.9 [18] | 0. 5 | nM |
KorB affinity to DNA | k 2 | lognormal | 9.3 [22] | 0. 5 | nM |
KorA affinity to KorB-DNA | k 3 | lognormal | 3.1 | 0. 5 | nM |
KorB affinity to KorA-DNA | k 4 | lognormal | 3.1 [22] | 0. 5 | nM |
KorA monomerization | σ A | - | - | - | s-1 |
KorB monomerization | σ B | - | - | - | s-1 |
KorA dimerization | λ A | lognormal | 0.001 | 0.05 | nM-1s-1 |
KorB dimerization | λ B | lognormal | 0.001 | 0.05 | nM-1s-1 |
Protein degradation | γ P | lognormal | 0.0003875 | 0.05 | s-1 |