Table 1 Gene Ontology (GO) Annotations to Differentially Expressed Genes
From: How yeast re-programmes its transcriptional profile in response to different nutrient impulses
Significantly Associated Process GO Term | p-value | Fraction of Differentially Expressed Subset Associated with the GO Term | Fraction of Transcriptome Associated with the GO Term |
|---|---|---|---|
Carbon Catabolite Repression | Â | Â | Â |
Carboxylic metabolic processes | 4.07 × 10-21 | 74/372 | 344/6353 |
Aspartate family amino acid metabolic processes | 1.09 × 10-6 | 17/372 | 48/6353 |
Glutamine family amino acid metabolic processes | 2.35 × 10-4 | 11/372 | 27/6353 |
Methionine family amino acid metabolic processes | 1.69 × 10-3 | 10/372 | 26/6353 |
Serine family amino acid metabolic processes | 9.85 × 10-3 | 13/372 | 37/6353 |
Purine metabolic processes | 2.37 × 10-9 | 17/372 | 35/6353 |
Glycolysis | 4.20 × 10-8 | 13/372 | 22/6353 |
Oxidative phosphorylation | 4.79 × 10-8 | 18/372 | 46/6353 |
Alcohol catabolic processes | 1.19 × 10-7 | 19/372 | 54/6353 |
Energy coupled proton transport | 3.81 × 10-7 | 11/372 | 17/6353 |
Nitrogen Catabolite Repression | Â | Â | Â |
glycolysis | 3.95 × 10-16 | 15/369 | 22/6353 |
gluconeogenesis | 5.85 × 10-6 | 9/369 | 15/6353 |
Proton transport | 8.02 × 10-6 | 11/369 | 21/6353 |
Oxidative phosphorylation | 2.98 × 10-4 | 14/369 | 46/6353 |
Aspartate family amino acid metabolic process | 5.38 × 10-4 | 14/369 | 48/6353 |
Amino acid and derivative metabolic process | 4.19 × 10-3 | 36/369 | 273/6353 |