From: How yeast re-programmes its transcriptional profile in response to different nutrient impulses
 | Branch of Down-regulated Transcripts | Branch of Up-regulated Transcripts | ||||
---|---|---|---|---|---|---|
Case | Bifurcation Controlling TFs | Process Gene Ontology Terms | p-value | Bifurcation Controlling TFs | Process Gene Ontology Terms | p-value |
Carbon Catabolite Repression | Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p | ion trans-membrane transporter activity | 5.3 × 10-5 | Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p | Endoplasmic reticulum membrane | 4.7 × 10-5 |
 |  | G1-specific transcription in mitotic cell cycle | 5.0 × 10-3 |  | Microtubule associated complex | 2.8 × 10-3 |
 |  | aerobic respiration | 8.4 × 10-5 |  | tRNA modification | 1.0 × 10-3 |
 |  | retrograde transport | 8.1 × 10-3 |  | Proteasome complex | 1.3 × 10-3 |
Nitrogen Catabolite Repression | Hms1p, Mga1p, Msn1p, Phd1p, Hap2p | ion trans-membrane transport | 5.9 × 10-3 | Gcr2p | ribosome biogenesis and assembly | 2.9 × 10-3 |