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Table 3 Descriptions of reactions

From: Computational modeling of apoptotic signaling pathways induced by cisplatin

Descriptions of reactions

 

I.

II-2.

C i s p l a t i n + O C T 2 → k 1 + A q u a t e d C i s A q u a t e d C i s + F a s L → k 32 + F a s L * F a s L * + C a s p 8 ⇄ k 33 − k 33 + F a s L * ⋅ C a s p 8 → k 34 + C a s p 8 * C a s p 8 * + C a s p 3 ⇄ k 35 − k 35 + C a s p 8 * ⋅ C a s p 3 → k 36 + C a s p 8 * + C a s p 3 * → k 37 + A p o p C a s p 3 * + I A P ⇄ k 13 − k 13 + C a s p 3 * ⋅ I A P

C i s p l a t i n + O C T 2 → k 1 + A q u a t e d C i s A q u a t e d C i s + M i t → k 29 + mit R o s mit R o s + mit P T P → k 30 + mit P T P * mit P T P * + C y t c mit → k 31 + mit P T P * + C y t c C y t c + C a s p 9 ⇄ k 27 − k 27 + C y t c ⋅ C a s p 9 → k 28 + C a s p 9 * C a s p 9 * + C a s p 3 ⇄ k 9 − k 9 + C a s p 9 * ⋅ C a s p 3 → k 10 + C a s p 9 * + C a s p 3 * → k 11 + A p o p C a s p 9 * + I A P ⇄ k 12 − k 12 + C a s p 9 * ⋅ I A P C a s p 3 * + I A P ⇄ k 13 − k 13 + C a s p 3 * ⋅ I A P

II-1.

III.

C i s p l a t i n + O C T 2 → k 1 + A q u a t e d C i s A q u a t e d C i s + D N A → k 14 + D N A damage D N A damage + A T R → k 15 + A T R * A T R * + P 53 ⇄ k 16 − k 16 + A T R * ⋅ P 53 → k 17 + P 53 * P 53 * + C a s p 2 ⇄ k 18 − k 18 + P 53 * ⋅ C a s p 2 → k 19 + P 53 * + C a s p 2 * C a s p 2 * + A I F mit → k 20 + C a s p 2 * + A I F → k 21 + A p o p P 53 * + B a x ⇄ k 22 − k 22 + P 53 * ⋅ B a x → k 23 + B a x ⋅ B a k B c l 2 + B a x ⇄ k 24 − k 24 + B c l 2 ⋅ B a x P 53 * + B c l 2 ⇄ k 25 − k 25 + P 53 * ⋅ B c l 2 B a x ⋅ B a k + C y t c mit → k 26 + B a x ⋅ B a k + C y t c C y t c + C a s p 9 ⇄ k 27 − k 27 + C y t c ⋅ C a s p 9 → k 28 + C a s p 9 * C a s p 9 * + C a s p 3 ⇄ k 9 − k 9 + C a s p 9 * ⋅ C a s p 3 → k 10 + C a s p 9 * + C a s p 3 * → k 11 + A p o p C a s p 9 * + I A P ⇄ k 12 − k 12 + C a s p 9 * ⋅ I A P C a s p 3 * + I A P ⇄ k 13 − k 13 + C a s p 3 * ⋅ I A P

C i s p l a t i n + O C T 2 → k 1 + A q u a t e d C i s A q u a t e d C i s + E R → k 2 + C a 2 + C a 2 + + C a l p a i n ⇄ k 3 − k 3 + C a 2 + ⋅ C a l p a i n → k 4 + C a l p a i n * C a l p a i n * + C a s p 12 ⇄ k 5 − k 5 + C a l p a i n * ⋅ C a s p 12 → k 6 + C a s p 12 * C a s p 12 * + C a s p 9 ⇄ k 7 − k 7 + C a s p 12 * ⋅ C a s p 9 → k 8 + C a s p 12 * + C a s p 9 * C a s p 9 * + C a s p 3 ⇄ k 9 − k 9 + C a s p 9 * ⋅ C a s p 3 → k 10 + C a s p 9 * + C a s p 3 * → k 11 + A p o p C a s p 9 * + I A P ⇄ k 12 − k 12 + C a s p 9 * ⋅ I A P C a s p 3 * + I A P ⇄ k 13 − k 13 + C a s p 3 * ⋅ I A P

  1. k+, forward rate constant of reaction; k–, reverse rate constant of reaction; Casp12*, activated caspase-12.