Table 10 Predicted genes for gap-filling SMILEY solutions
Hypothesized changes in directionality | Â | |
|---|---|---|
Reaction | Support | Â |
DOGULNR | not reversible (EcoCyc) | Â |
DKGLCNR1 | reversible (Habrych et al. [41]) | |
DKGLCNR2y | reversible (Yum et al. [42]) | |
PGLYCP | not reversible (EcoCyc) | Â |
CYSSADS | Â | Â |
HMPK1 | not reversible (EcoCyc) | Â |
4HTHRS | Â | Â |
HETZK | not reversible (EcoCyc) | Â |
NNDMBRT | not reversible (EcoCyc) | Â |
ACONMT | not reversible (EcoCyc) | Â |
CINNDO | not reversible (EcoCyc) | Â |
MCPST | Â | Â |
GPDDAS | not reversible (EcoCyc) | Â |
APCS | not reversible (EcoCyc) | Â |
SARCOX | Â | Â |
Hypothesized gap-filling reactions | Â | |
Reaction | Putative gene | E-value |
R01742 (F) | ydiS (b1699) | 0.003 |
R00893 (F) | ygfM (b0419) | 0.58 |
R02133 (F) | yhbO (b3153) | 0.069 |
R02721 (F) | global orphan | Â |
R03472 (R) | global orphan | Â |
R01297 (R) | global orphan | Â |
R01299 (R) | global orphan | Â |
R02252 (F) | fadH (b3081) | 7.00E-71 |
| Â | nemA (b1650) | 1.00E-22 |
R00895 (R) | aspC (b0928)* | Â |
R03530 (F) | ndk (bb2518)* | Â |
R00012 (F) | global orphan | Â |
R01232 (R) | yjhG (b4297) | 0.028 |
| Â | yagF (b0269) | 0.057 |
R00838 (F) | chbF (b1734) | 9.00E-42 |
| Â | melA (b4119) | 2.00E-21 |
R00655 (R) | global orphan | Â |
R07300 (F) | global orphan | Â |
R00683 (F) | global orphan | Â |
R00367 (F) | global orphan | Â |
R02559 (F) | global orphan | Â |
R02560 (F) | global orphan | Â |
R05623 (F) | yjiN (b4336) | 0.16 |