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Table 3 Examples of highly weighted side effects for each protein domain inferred by the L1LOG method

From: Inferring protein domains associated with drug side effects based on drug-target interaction network

Rank

Weight

Protein domain ID

Protein domain definition

Side effect

1

 

PF13558

SbcCD_C (Putative exonuclease SbcCD, C subunit)

 
 

330.0000

  

anaphylaxis

 

41.1178

  

allergic reaction

2

 

PF10320

7TM_GPCR_Srsx (Serpentine type 7TM GPCR chemoreceptor Srsx)

 
 

330.0000

  

tardive dyskinesia

 

216.3340

  

mental depression

 

102.3075

  

regurgitation

 

100.7863

  

shortness of breath

 

90.8773

  

hyperprolactinemia

3

 

PF10316

7TM_GPCR_Srbc (Serpentine type 7TM GPCR chemoreceptor Srbc)

 
 

330.0000

  

labyrinthitis

 

330.0000

  

nasal congestion

 

327.1335

  

burning sensation

 

266.0200

  

torticollis

 

225.7442

  

testicular swelling

4

 

PF02898

NO_synthase (Nitric oxide synthase, oxygenase domain)

 
 

330.0000

  

shortness of breath

 

292.0382

  

hypoventilation

 

232.9827

  

respiratory arrest

 

229.9422

  

increased salivation

 

204.4183

  

blindness

5

 

PF10324

7TM_GPCR_Srw (Serpentine type 7TM GPCR chemoreceptor Srw)

 
 

330.0000

  

priapism

 

330.0000

  

nasal congestion

 

330.0000

  

weakness

 

325.3147

  

shortness of breath

 

279.9735

  

ptosis

6

 

PF00191

Annexin (Annexin)

 
 

326.7361

  

glycosuria

 

117.1047

  

vasculitis

 

95.9706

  

sialadenitis

 

79.3155

  

COPD

 

71.9669

  

choking

7

 

PF02931

Neur_chan_LBD (Neurotransmitter-gated ion-channel ligand binding domain)

 
 

324.4456

  

shortness of breath

 

281.0425

  

hypoventilation

 

244.4901

  

increased salivation

 

228.2349

  

respiratory arrest

 

221.8014

  

drug dependence

8

 

PF00060

Lig-chan (Ligand-gated ion channel)

 
 

320.0000

  

anaphylaxis

 

19.4911

  

allergic reaction

9

 

PF08377

MAP2_projctn (MAP2/Tau projection domain)

 
 

251.7744

  

hyperuricemia

 

145.3436

  

glycosuria

 

47.3304

  

sialadenitis

 

44.6506

  

choking

 

36.2648

  

polydipsia

10

 

PF14396

CFTR_R (Cystic fibrosis TM conductance regulator (CFTR), regulator domain)

 
 

239.2866

  

gallbladder disease

 

212.0452

  

gynecomastia

 

156.3952

  

paronychia

 

134.2967

  

prostatism

 

131.3925

  

cervical erosion