Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

BMC Systems Biology

Table 2 Associations between the metabolites-reactions-enzymes-genes-logFC values. Positive logFC values indicate the logarithmic foldness of up-regulation of respective genes

Metabolite	Metabolite's Reaction	Enzyme catalyzing the reaction	Gene association of the enzyme	logFC compared to Glucose
Metabolite	Metabolite's Reaction	Enzyme catalyzing the reaction	Gene association of the enzyme	O-BGHEXA	O-GMH	O-XPE	O-AHP	O-GM3	SOP	TYR	O-MHE	O-CHE	X ₃ Glc ₄
H₂SO₃	H₂SO₃ + 3 NADPH => H₂S + 3 NADP + 3 H₂O	Sulfite reductase (NADPH)	AO090001000571	−1.74	−2.52	−2.07	−2.24	−2.16	−4.11	−2.5	−3.51	−4.4	−4.61
SLF	SLFe => SLF	Sulfate transporter	AO090003000798	−1.53	−1.52	-	−1.74	−1.56	−4.26	−3.57	−4.12	−3.75	−4.08
UPGIII	SAM + UPGIII => SAH + PRECOR	Uroporphyrin-III C-methyltransferase	AO090020000339	−1.57	−1.82	−1.5	−1.57	−1.37	−2.44	−2.36	−3.18	−2.48	−2.64
PETHM	PE => DAGLY + PETHM	Phospholipase C	AO090103000073	1.26	1.28	1.1	0.95	0.75	1.04	0.91	1.26	0.95	0.74
T3P1	R5P + XUL5P <=> S7P + T3P1	Transketolase	AO090023000345	1.2	1.09	1.04	1.27		1.08	0.98		1.33	1.27
	E4P + XUL5P <=> F6P + T3P1							-			-
	XUL5P + FALD <=> T3P1 + GLYN
TAUR	TAUR + AKG + O₂ => H₂S + AMIACE + SUCC + CO₂	Alpha-ketoglutarate-dependent taurine dioxygenase	AO090023000531	−1.4	-	−1.69	−1.55	−1.44	-	−1.53	−2.1	−1.86	-

Negative logFC values indicate the logarithmic foldness of down-regulation of respective genes
Abbreviations: H ₂ SO ₃ sulfite, SLF sulfate, UPGIII Uroporphyrinogen III, PETHM ethanolamine phosphate, T3P1 D-glyceraldehyde 3-phosphate, TAUR taurine, O-BGHEXA 1,3:1,4-β-glucohexaose, O-GMH 6³-α-D-glucosyl-maltotriosyl-maltotriose, O-XPE xylopentaose, O-AHP arabinoheptaose, O-GM3 6¹-α-D-galactosyl-mannotriose, SOP sophorose, TYR turanose, O-MHE mannohexaose, O-CHE cellohexaose, X ₃ Glc ₄ -borohydride reduced; O-X3G4R xyloglucan

ISSN: 1752-0509