From: Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability
Type of reaction | Gene 1 | Gene 2 |
---|---|---|
Repressor binding | \(\mathrm {D}^{1}_{00} + \mathrm {P}^{2}_{2} \underset {q_{12}}{\overset {k_{12}}{\rightleftharpoons }} \mathrm {D}^{1}_{10}\) | \(\mathrm {D}^{2}_{00} + \mathrm {P}^{1}_{2} \underset {q_{22}}{\overset {k_{22}}{\rightleftharpoons }} \mathrm {D}^{2}_{10}\) |
 | \(\mathrm {D}^{1}_{10} + \mathrm {P}^{2}_{2} \underset {q_{14}}{\overset {k_{14}}{\rightleftharpoons }} \mathrm {D}^{1}_{20}\) | \(\mathrm {D}^{2}_{10} + {P^{1}_{2}} \underset {q_{24}}{\overset {k_{24}}{\rightleftharpoons }} \mathrm {D}^{2}_{20}\) |
RNAp binding | \(\mathrm {D}^{1}_{00} + \mathrm {R} \underset {q_{13}}{\overset {k_{13}}{\rightleftharpoons }} \mathrm {D}^{1}_{01}\) | \(\mathrm {D}^{2}_{00} + \mathrm {R} \underset {q_{23}}{\overset {k_{23}}{\rightleftharpoons }} \mathrm {D}^{2}_{01}\) |
 | \(\mathrm {D}^{1}_{10} + \mathrm {R} \underset {q_{15}}{\overset {k_{15}}{\rightleftharpoons }} \mathrm {D}^{1}_{11}\) | \(\mathrm {D}^{2}_{10} + \mathrm {R} \underset {q_{25}}{\overset {k_{25}}{\rightleftharpoons }} \mathrm {D}^{2}_{11}\) |
 | \(\mathrm {D}^{1}_{20} + \mathrm {R} \underset {q_{17}}{\overset {k_{17}}{\rightleftharpoons }} \mathrm {D}^{1}_{21}\) | \(\mathrm {D}^{2}_{20} + \mathrm {R} \underset {q_{27}}{\overset {k_{27}}{\rightleftharpoons }} \mathrm {D}^{2}_{21}\) |
Transcription initiation | \(\mathrm {D}^{1}_{01} \overset {\alpha _{1m}}{\rightarrow } \mathrm {E}^{1} + \mathrm {D}^{1}_{00}\) | \(\mathrm {D}^{2}_{01} \overset {\alpha _{2m}}{\rightarrow } \mathrm {E}^{2} + \mathrm {D}^{2}_{00}\) |
 | \(\mathrm {D}^{1}_{11} \overset {\alpha _{1m}}{\rightarrow } \mathrm {E}^{1} + \mathrm {D}^{1}_{10}\) | \(\mathrm {D}^{2}_{11} \overset {\alpha _{2m}}{\rightarrow } \mathrm {E}^{2} + \mathrm {D}^{2}_{10}\) |
 | \(\mathrm {D}^{1}_{21} \overset {\alpha _{1m}}{\rightarrow } \mathrm {E}^{1} + \mathrm {D}^{1}_{20}\) | \(\mathrm {D}^{2}_{21} \overset {\alpha _{2m}}{\rightarrow } \mathrm {E}^{2} + \mathrm {D}^{2}_{20}\) |
Elongation | \(\mathrm {E}^{1} \overset {\alpha _{1m}^{\prime }}{\rightarrow } \mathrm {M}^{1} + \mathrm {R} \) | \(\mathrm {E}^{2} \overset {\alpha _{2m}^{\prime }}{\rightarrow } \mathrm {M}^{2} + \mathrm {R} \) |
Translation | \(\mathrm {M}^{1} \overset {\alpha _{1p}}{\rightarrow } \mathrm {P}^{1} + \mathrm {M}^{1} \) | \(\mathrm {M}^{2} \overset {\alpha _{2p}}{\rightarrow } \mathrm {P}^{2} + \mathrm {M}^{2} \) |
Dimerization | \(\mathrm {P}^{1} + \mathrm {P}^{1} \underset {q_{11}}{\overset {k_{11}}{\rightleftharpoons }} \mathrm {P}^{1}_{2}\) | \(\mathrm {P}^{2} + \mathrm {P}^{2} \underset {q_{21}}{\overset {k_{21}}{\rightleftharpoons }} \mathrm {P}^{2}_{2}\) |
Degradation | \(\mathrm {M}^{1} \overset {\gamma _{1m}}{\rightarrow } \oslash \) | \(\mathrm {M}^{2} \overset {\gamma _{2m}}{\rightarrow } \oslash \) |
 | \(\mathrm {P}^{1} \overset {\gamma _{1p}}{\rightarrow } \oslash \) | \(\mathrm {P}^{2} \overset {\gamma _{2p}}{\rightarrow } \oslash \) |
 | \(\mathrm {P}^{1}_{2} \overset {\gamma _{1p}/\sigma _{1}}{\rightarrow } \oslash \) | \(\mathrm {P}^{2}_{2} \overset {\gamma _{2p}/\sigma _{2}}{\rightarrow } \oslash \) |