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Table 1 The parameter settings and biological emphases in the five queries

From: Metabolic pathway alignment between species using a comprehensive and flexible similarity measure

  ω c ω e ω f ω q Z 0 Emphasis
Query 1 0.5 0.5 0.5 0.5 0 for all overall
Query 2 0 1 0.5 0.5 0 for all enzyme
Query 3 1 0 0 0 0 for all compound
Query 4 0.5 0.5 0.5 0.5 100 for "dg"and "eg",
0 otherwise
gap
Query 5 0 1 1 0 0 for all enzyme function