Table 1 The parameter settings and biological emphases in the five queries
From: Metabolic pathway alignment between species using a comprehensive and flexible similarity measure
|  | ω c | ω e | ω f | ω q | Z 0 | Emphasis |
|---|---|---|---|---|---|---|
Query 1 | 0.5 | 0.5 | 0.5 | 0.5 | 0 for all | overall |
Query 2 | 0 | 1 | 0.5 | 0.5 | 0 for all | enzyme |
Query 3 | 1 | 0 | 0 | 0 | 0 for all | compound |
Query 4 | 0.5 | 0.5 | 0.5 | 0.5 | 100 for "dg"and "eg", 0 otherwise | gap |
Query 5 | 0 | 1 | 1 | 0 | 0 for all | enzyme function |